Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2510 132 6e-25 seq1993 118 1e-20 seq1479 113 6e-19 seq2641 107 2e-17 seq2910 98.7 1e-14 >seq2510 Length=23295 Score = 132 bits (146), Expect = 6e-25 Identities = 205/287 (71%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| || ||||| ||| | |||||| || | |||||| | |||||| || ||||| Sbjct 9665 ACCCTCATCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCAGCCATGAGACCACGCTT 9606 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| || || | | ||| ||| ||||| ||||| ||||| ||||| || || Sbjct 9605 CTTGAGCCAGAAAATAGAGGCGAACGAGCCGGAGAAGAAGATACCCTCAACGGCAGCGAA 9546 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCT-CCTTGTTGATCCACTTCATCGCCC 869357 | | | || |||| |||||||||| || || | |||| ||||||| | | |||| Sbjct 9545 GGCAACCAGGCGCTGGGCAAAGGTG--GAATCCTTGTCTTG--GATCCACCTGACAGCCC 9490 Query 869358 AGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCCTTT 869416 |||||||||| ||| | | | || | || |||||||| ||||||| || | Sbjct 9489 AGTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCGATGGCATTGAAGAGGTATGTGC-GC 9431 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | |||| | ||||||| || |||||||| ||||| || || ||||| Sbjct 9430 TGGGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTATGTCTC 9384 Score = 123 bits (136), Expect = 3e-22 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||| ||| | || ||| ||| || ||||||||||| || | || ||||| |||||| Sbjct 9971 GTAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTTCCTGCCAGGGAGATGTTCTCCAT 9912 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||| ||||||| | ||||||| ||| ||| ||||| || ||||| | Sbjct 9911 GAAGTCGAAGGGGTTGGTAGACTTGTAGAACTTCTCGTTACCGAGAGAAAGCAGCAGCCT 9852 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 ||||||||| ||||| ||||| || ||| | | |||||||||||||| ||||| Sbjct 9851 GTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGCAGCGCACA 9792 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGA 868931 || || | ||| ||| ||||||| ||||||| |||| |||||| ||||| Sbjct 9791 TGGGAGTGCCTCTGTCAAGAACTCTTGCTCGATCGCGACAGCCTCGGTGATGA 9739 >seq1993 Length=14110 Score = 118 bits (130), Expect = 1e-20 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || ||| | ||||| ||| |||||||||| ||||||||||| ||||||||| | || Sbjct 1996 CTGTTCGAGATCATCCTGGCCTCCAACTACCTGGACATCAAGCCGCTGCTCGATGTCGGC 2055 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | ||||| || ||||| ||||| ||| |||||||||||| | ||||| ||| Sbjct 2056 TGCAAGACGGTGGCGAATATGATTAAGGGAAAGAGCCCCGAGGAGATCAGGAAGACGTTT 2115 Query 1592288 AACAT 1592292 || || Sbjct 2116 AATAT 2120 >seq1479 Length=10203 Score = 113 bits (124), Expect = 6e-19 Identities = 182/259 (70%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| ||||| | || |||| ||| ||||||||||||||||| |||| ||||| || Sbjct 6867 CTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCGTTCGA 6808 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 | |||||||| || || | ||| || |||| ||| || | || | || || Sbjct 6807 GTTTCCGTTGGTACCGGCAATGTATGCACCGGTGGCACGGATACGATGGATGTTCAATCC 6748 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCT 1630243 ||| || ||||| | ||| ||||| | || || ||| ||||| ||||| ||||| |||| Sbjct 6747 GATACCTCCGGCAGTCTTTGAGATCATGGCACA-TGTCTTGAGTGTGTCATAGATACCCT 6689 Query 1630244 CGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGC 1630303 | || || |||||||||| || | ||||| || || || | || | || | Sbjct 6688 CAATACTATCCTCCTTCATGTCGACCAAGAAGCAGGATGACAGCTGGGCCTGTGGTGTAC 6629 Query 1630304 CGGCGTTGAAGAGCGTGGG 1630322 | || |||||||| || || Sbjct 6628 CAGCATTGAAGAGTGTTGG 6610 >seq2641 Length=531 Score = 107 bits (118), Expect = 2e-17 Identities = 120/158 (76%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||||||| ||||| || || || || ||||| || || || |||||| Sbjct 265 GACAGCATCGGTGGCACCGTCACCTGTGTCATCAAGAACGTCCCCAGCGGTCTTGGCGAG 324 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || |||||||||||||| || ||| |||||||||||||||||| ||||| |||||| Sbjct 325 CCCTGCTTTGACAAGATGGAAGCCATGCTCGCCCACGCCATGCTTAGCATCCCCGCCACC 384 Query 19167 AAGGGATTCGAGATTGGCAGCGGGTTT--GCGGGTGCG 19202 ||||| |||||| | || | | ||||| |||| |||| Sbjct 385 AAGGGCTTCGAGGTCGG-ATCCGGTTTCGGCGGTTGCG 421 >seq2910 Length=939 Score = 98.7 bits (108), Expect = 1e-14 Identities = 165/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 18096 CTTTGGCGAGTCGCACGGGGCGGGCG-TCGGCTGCATCATCGACGGCGTGCCGCCGTGCA 18154 || |||||||||||| | || || | || |||||| |||| ||| || || | | Sbjct 641 CTATGGCGAGTCGCATTGT-CGCTCGGTGGGATGCATCGTCGATGGCTGCCCCCCAGGAA 699 Query 18155 TGCCACTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCG 18214 || || |||| ||||| |||||||||||| || || |||||||| || ||| ||| Sbjct 700 TGGAGCTCACCGAAGCCGATATCCAGCCTCAGATGACCCGCCGCCGACCAGGTCAGAGCG 759 Query 18215 CACTTTCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACG 18274 | || | ||||| ||| ||||| || | ||| ||||| || ||||| ||| || Sbjct 760 CCCTGACGACGCCCCGCGACGAGAAGGACCAAGTCGAAATCCACTCCGGCACCGAGTTCG 819 Query 18275 GCCTCACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCC 18330 || | ||||| ||| | || ||||| | | || ||||| |||||||| ||| Sbjct 820 GCGTTACGCTGGGCACCCCGATCGGCATGCTCGTCCGCAACCAGGACCAGCGCCCC 875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106865186023463