Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2510 152 8e-31 seq1993 113 7e-19 seq455 93.3 7e-13 seq1479 91.5 2e-12 >seq2510 Length=23295 Score = 152 bits (168), Expect = 8e-31 Identities = 234/329 (71%), Gaps = 5/329 (2%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| || ||||| ||| | |||||| || |||||| | |||||| || ||||| Sbjct 9665 ACCCTCATCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCAGCCATGAGACCACGCTT 9606 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| || || | ||| ||| ||||| ||||| ||||| ||||| || || Sbjct 9605 CTTGAGCCAGAAAATAGAGGCGAACGAGCCGGAGAAGAAGATACCCTCAACGGCAGCGAA 9546 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | | || || |||| |||||| ||| | || | | | | ||||||| | | ||||| Sbjct 9545 GGCAACCAGGCGCTGGGCAAAGGTGG--AATCCTTGTCT-TGGATCCACCTGACAGCCCA 9489 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTG-GTCCTTCT 794578 || ||||| ||| | | | || | || |||||||| ||||||| || | || Sbjct 9488 GTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCGATGGCATTGAAGAGGTATGTGCG-CT 9430 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 | || | ||||||| ||| |||||||||||||| ||||| ||||| | ||| ||||| | Sbjct 9429 GGGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTATGTCTCGGCGTGAATGTTCT 9370 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCAG 794667 |||| ||| ||||| || || |||||| Sbjct 9369 CGATCATGATTTGGAAACCGTAGAAGCAG 9341 Score = 125 bits (138), Expect = 1e-22 Identities = 169/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 || ||| | || ||| ||| || ||||||||||| || | || ||||| |||||| Sbjct 9970 TAGTCGGCGACACGCTTCTCAAAGAAGTTGGTCTTTCCTGCCAGGGAGATGTTCTCCATG 9911 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGG 794027 | ||| ||||||| | | |||| ||||||| ||||| || ||||| | | Sbjct 9910 AAGTCGAAGGGGTTGGTAGACTTGTAGAACTTCTCGTTACCGAGAGAAAGCAGCAGCCTG 9851 Query 794028 TCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CAC 794086 ||||||||||| |||||||| || ||| | | |||||||||||||| ||||| || Sbjct 9850 TCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGCAGCGCACAT 9791 Query 794087 GGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGA 794139 ||| || | ||| | | ||||||| ||||||| |||| |||||| |||||| Sbjct 9790 GGG-AGTGCCTCTGTCAAGAACTCTTGCTCGATCGCGACAGCCTCGGTGATGA 9739 >seq1993 Length=14110 Score = 113 bits (124), Expect = 7e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 2035612 AGGTCGACCAACCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 2035671 ||||||||||| | || || ||| | ||||| ||| |||||||||| |||||||||| Sbjct 1979 AGGTCGACCAAGAGATGCTGTTCGAGATCATCCTGGCCTCCAACTACCTGGACATCAAGC 2038 Query 2035672 CCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGG 2035731 | || |||||| | || |||||||| ||||| || | || ||||| ||| ||||||| Sbjct 2039 CGCTGCTCGATGTCGGCTGCAAGACGGTGGCGAATATGATTAAGGGAAAGAGCCCCGAGG 2098 Query 2035732 ACATCCGCAAGACCTTTAACAT 2035753 | ||| | ||||| ||||| || Sbjct 2099 AGATCAGGAAGACGTTTAATAT 2120 >seq455 Length=26256 Score = 93.3 bits (102), Expect = 7e-13 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 2019204 GGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAG 2019263 || ||||| ||| | |||| ||||| ||||| ||| || | || || | ||||| || Sbjct 5750 GGACGCCAAAAGCTTGTCATTCTCGACGAGGCGGACAGCATGACATCTGGTGCCCAACAA 5691 Query 2019264 GCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAAC 2019323 |||||||| || ||||| | ||| | || || || ||||| | || |||||| Sbjct 5690 GCCCTCCGCCGCACTATGGAGATATACTCTTCGACCACCCGCTTTGCATTTGCGTGCAAC 5631 Query 2019324 ACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGC 2019383 ||| | | ||||||| |||| ||| | || ||||||||||||| ||| | Sbjct 5630 CAGTCCAACAAGATCATCGAGCCCCTGCAGTCGAGATGTGCCATCTTGCGCTATGCAAGG 5571 Query 2019384 CTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439 || || || || || ||| |||||| | | |||||||||| || || ||||| Sbjct 5570 CTAACAGATGCACAAGTCGTGAAGCGTCTTCTCCAGATTATCGAGGCAGAGAAGGT 5515 >seq1479 Length=10203 Score = 91.5 bits (100), Expect = 2e-12 Identities = 175/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 |||||| || || | || |||| ||| ||||||||||||||||| || | ||||| || Sbjct 6867 CTGGTCAACGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCGTTCGA 6808 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCC 2073659 | |||||||| || || | ||| || || | ||| || | || | || || Sbjct 6807 GTTTCCGTTGGTACCGGCAATGTATGCACCGGTGGCACGGATACGATGGATGTTCAATCC 6748 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 ||| || ||||| | ||| ||||| | || || | || || || || ||||| ||||| Sbjct 6747 GATACCTCCGGCAGTCTTTGAGATCATGGCACATGTCTTGAGTGTGTCATAGATACCCTC 6688 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 || || |||||||||| | || ||||| || || || | | | || || Sbjct 6687 AATACTATCCTCCTTCATGTCGACCAAGAAGCAGGATGACAGCTGGGCCTGTGGTGTACC 6628 Query 2073780 GGCATTGAAGAGCGTGGG 2073797 ||||||||||| || || Sbjct 6627 AGCATTGAAGAGTGTTGG 6610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915891215340821