Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq1537 140 2e-28 seq1071 123 2e-23 seq1847 100 2e-16 >seq1537 Length=49637 Score = 140 bits (154), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| ||||| ||||| ||| ||||||||| ||||| |||||||| ||| |||| || Sbjct 26401 CTCAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCA 26460 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || || ||||| |||||||||||||| || |||||||| | || | ||||||||| Sbjct 26461 TCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 26520 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGT 34938 || | || || ||||| || | ||||| || | ||| || |||| ||| Sbjct 26521 TCCTGGATCTTGGACTTGAC--AT--TGTCGATAGTGTCGGACGACTCCACCTCAAGGGT 26576 Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 || ||||| ||||| |||||||| || ||||| ||||||| Sbjct 26577 GATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATGA 26617 >seq1071 Length=16463 Score = 123 bits (136), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 8/194 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | |||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 1765 AGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 1824 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||||||||||||||||||||| ||||||||||| | || | ||||||||||| Sbjct 1825 TCAAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCT 1884 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || | ||||| || || |||||| |||| ||| || Sbjct 1885 TGGATCTTGCTCTTAAC--AT--TGTCGATAGTATCGGAGGACTCGACCTCAAGGGTGAT 1940 Query 34942 GGTCTTTCCCGTGA 34955 |||||| || |||| Sbjct 1941 GGTCTTGCCAGTGA 1954 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| |||||||||||||| ||||| ||||| || | | | |||| Sbjct 853 AGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTCCCATCC 912 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||||||||| || |||||||| | || | |||||||| || Sbjct 913 TCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCC 972 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| || ||| | || | || | ||| || || | || |||||| Sbjct 973 TGAATCTTTGACTTAACGTTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATGGTC 1032 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | |||||| ||||| |||||||| Sbjct 1033 TTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1064 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/218 (70%), Gaps = 10/218 (5%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||| ||| | || ||||||||||||||| || || || | | |||| |||| Sbjct 1308 CAGAACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCGGACAAGGTGCGGCCATC 1367 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || |||||||| || |||||||| | || | |||||||| || Sbjct 1368 CTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATC 1427 Query 34885 GTTTATTTTTTGTTTGACG-----GATGCTATCGATTCATTGGCCTCGACATCAACGGTT 34939 | || || || ||| ||| ||||| | || || || |||| || Sbjct 1428 CTGGATCTTCGACTTCACGTTGTCAATGGTATCGGATGAT-----TCCACCTCAAGCGTG 1482 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| ||||| || ||||| || || |||||||| Sbjct 1483 ATCGTCTTCCCCGTAAGAGTCTTGACGAAAATCTGCAT 1520 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | || ||||||||||||||| ||||| || |||| |||| Sbjct 1537 AGGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGACCATCC 1596 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| ||||| || ||||| |||| || |||||||| | || | ||||||||||| Sbjct 1597 TCCAACTGCTTGCCCGCGAAAATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 1656 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || || || || | ||||| ||| | ||| || || | || || Sbjct 1657 TGAATCTTCGACTTCAC--AT--TGTCGATAGTGTCAGACGACTCAACCTCCAAAGTGAT 1712 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| || || |||||||| || || |||||||| Sbjct 1713 GGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 1748 >seq1847 Length=30800 Score = 100 bits (110), Expect = 2e-16 Identities = 135/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || || |||| |||| || || ||||| || || |||| Sbjct 17777 CCTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGA 17718 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| | || | ||||||||||| | || || ||||| || Sbjct 17717 TCAGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGAC--AT- 17661 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || |||||| |||| ||| |||||||| ||||| | |||||| Sbjct 17660 -TGTCGATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTG 17602 Query 34964 ACAAAG 34969 || ||| Sbjct 17601 ACGAAG 17596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325679546236841