Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1537 102 2e-16 seq1071 96.9 8e-15 >seq1537 Length=49637 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || ||||| || ||||| |||| Sbjct 26600 AAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCGTCCGACACTATCGACAAT 26541 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || |||||| |||||| || | || |||||| Sbjct 26540 GTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGCCTGATCTTC 26481 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || ||||| | || | | || |||||| ||||||| ||||| Sbjct 26480 GCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCC 26421 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| | || ||||||||||| Sbjct 26420 ACTCTTCACTTGGTCTTGAGACTTCG 26395 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || | ||||||||| ||||| ||||||| || ||||| | | || Sbjct 26395 CGAAGTCTCAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTG 26454 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||| || |||||||| ||||||||||| || || || || Sbjct 26455 CGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTG 26498 >seq1071 Length=16463 Score = 96.9 bits (106), Expect = 8e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || ||||||||||| || || |||||| Sbjct 1745 CAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTTGAGTCGTCTGAC 1686 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || ||| |||||| || Sbjct 1685 ACTATCGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAG 1626 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || ||||| || ||||||||||| ||||| | ||| || ||| |||||| | Sbjct 1625 CGCTTGATTTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACTCTGAGCGACTACAACATT 1566 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| ||||| ||| Sbjct 1565 CAGAAGGAGTCGACTCTCCAC 1545 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || ||||| || || ||| | || || || ||| ||| Sbjct 1061 CAGATTTTTGTCAAGACCTTGACTGGAAAGACCATTACTCTCGAGGTTGAGTCTTCAGAC 1002 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||||||| || || || || || |||||| || Sbjct 1001 ACCATTGACAACGTTAAGTCAAAGATTCAGGATAAGGAGGGTATCCCACCGGACCAGCAG 942 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || ||||| ||||| || ||| |||||| || Sbjct 941 CGCCTGATCTTCGCCGGGAAGCAGCTCGAGGATGGGAGGACGCTGAGCGACTACAACATC 882 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||| ||||||||| Sbjct 881 CAGAAGGAGAGCACTCTTCAC 861 Score = 93.3 bits (102), Expect = 1e-13 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| ||||| || || || ||||||| || || || || |||| Sbjct 1278 CAAGACTCTCACCGGAAAGACAATTACGCTGGAAGTCGAGTCGTCGGATACCATCGATAA 1219 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| ||||||||||| || || || || |||||| || | || || || Sbjct 1218 CGTCAAGTCCAAGATTCAAGATAAGGAGGGCATCCCACCGGACCAGCAGCGCCTGATTTT 1159 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| | || ||||| | |||||| | ||||||||| ||||||| ||||| Sbjct 1158 CGCGGGCAAGCAGCTCGAGGATGGCCGTACTTTGTCTGATTACAACATCCAGAAGGAGTC 1099 Query 206364 TACTCTTCACCTTGTT 206379 || | || |||||| Sbjct 1098 CACATTACATCTTGTT 1083 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || |||||||| | || |||||| || || Sbjct 1517 CAGATTTTCGTCAAGACTCTTACGGGGAAGACGATCACGCTTGAGGTGGAATCATCCGAT 1458 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || || |||||| || Sbjct 1457 ACCATTGACAACGTGAAGTCGAAGATCCAGGATAAGGAGGGTATCCCACCGGACCAGCAG 1398 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| |||| ||||| | || ||| ||||||||||| | Sbjct 1397 CGCCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCTTGTCCGATTACAACATT 1338 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||||||||| ||| | ||| || | || || Sbjct 1337 CAGAAGGAGTCTACTCTGCACTTGGTTCTGCGTCTGCG 1300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181770240598219