Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1071 98.7 9e-16 seq1479 82.4 7e-11 >seq1071 Length=16463 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| |||||| || | | ||||| || ||||||||||| ||| || ||| Sbjct 1299 ACGCAGACGCAGAACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCGGACAAGGT 1358 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| ||||| | | |||| || ||||| || || || || || || Sbjct 1359 GCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACC 1418 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || ||||| || || |||| | || | ||||||| | ||||| || | Sbjct 1419 CTCCTTATCCTGGATCTTCGACTTCACGTTGTCAATGGTATCGGATGATTCCACCTCAAG 1478 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| || || || ||||| || | |||||||||||| Sbjct 1479 CGTGATCGTCTTCCCCGTAAGAGTCTTGACGAAAATCTGCAT 1520 >seq1479 Length=10203 Score = 82.4 bits (90), Expect = 7e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 148237 TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGC 148296 || |||||||| || | || || || |||||||||||||| | ||| || ||||| | | Sbjct 6572 TATGTCTCAATGGCCTTCTCAATATCCTCGCCGTGAATGCCAACCGCCACACGCATAATC 6513 Query 148297 ATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGG 148356 ||||||||||| | ||| ||||| | | | |||||| ||| | || ||| Sbjct 6512 ATGTGCTGTGGCCTTTCAGCAACGTTGCCATCAAGGCGGAGAAGGTATGAACGCTCAAGG 6453 Query 148357 GTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 || ||| | |||||||| | ||| | ||||| | |||||| || ||| Sbjct 6452 GTCTTGAAGCCAAAGTATTGGTAGTTGAAATCACGGTCGTAAAGGACGGC 6403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476591307440040