Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1071 156 4e-33 seq1537 122 8e-23 seq1847 96.9 3e-15 >seq1071 Length=16463 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | ||| |||||| |||||||||||||||| | Sbjct 1294 CCACCACGCAGACGCAGAACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCGGAC 1353 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || |||||||||||||| ||||| |||| ||||||||||||| || Sbjct 1354 AAGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGG 1413 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||| ||| |||||| ||||| |||| | | || ||| |||||||| Sbjct 1414 ATACCCTCCTTATCCTGGATCTTCGACTTCA-CGTTGTCAATGGTATCGGATGATTCCAC 1472 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||||||| || ||||| | ||| || || || |||||||| Sbjct 1473 CTCAAGCGTGATCGTCTTCCCCGTAAGAGTCTTGACGAAAATCTGCAT 1520 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| ||| || || || | || |||| |||||| ||||| || Sbjct 1557 CTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGACCATCCTCCAACTGCTTGCCCGCGAA 1616 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||||| ||||| || |||||||||| ||||| ||||| | | Sbjct 1617 AATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTCGACTTCACATT 1676 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| ||| || ||||||| ||||| || || || |||| || || || Sbjct 1677 GTCGATAGTGTCAGACGACTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTGAC 1736 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1737 GAAAATCTGCAT 1748 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | || |||||||| || |||||||| ||| | Sbjct 838 CCACCACGAAGACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 897 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || | | | || || |||||||| || || || |||| ||||||||||||| || Sbjct 898 AGCGTCCTCCCATCCTCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 957 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||| ||| |||||| ||| | |||| | | ||||| || || || Sbjct 958 ATACCCTCCTTATCCTGAATCTTTGACTT-AACGTTGTCAATGGTGTCTGAAGACTCAAC 1016 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | || || || || || ||||| || || ||||| |||||||| Sbjct 1017 CTCGAGAGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1064 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | || | |||||| || |||||| || ||||||||||| | | Sbjct 1066 CCACCACGGAGGCGGAGAACAAGATGTAATGTGGACTCCTTCTGGATGTTGTAATCAGAC 1125 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || |||||||| ||||| || |||| ||||||||||||| || Sbjct 1126 AAAGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGGTGGG 1185 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||| || ||||| ||| | | | | || || ||| || || Sbjct 1186 ATGCCCTCCTTATCTTGAATCTTGGACTTGACGTTATCGATGGTATCCGACGACTCGACT 1245 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||| || || || || || | ||| || || || || ||||| Sbjct 1246 TCCAGCGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 1292 >seq1537 Length=49637 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | ||||| ||||| || | || |||||| || |||||||| || | Sbjct 26389 CCTCCACGAAGTCTCAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAA 26448 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || |||||||| || || || |||| ||||||||||||| ||| Sbjct 26449 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 26508 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||| | | | | | |||||| ||| |||||| Sbjct 26509 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCCACC 26568 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||||| || ||||| || || ||||| Sbjct 26569 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 26615 >seq1847 Length=30800 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 |||| || |||||||| |||| | || || | || || |||||||| || ||||| | Sbjct 17777 CCTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGA 17718 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||||| ||||| | |||||||||| |||||| ||| | | | Sbjct 17717 TCAGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 17658 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAA 35726 | | || ||| || || ||||| | ||||| || || |||||||| || || || | Sbjct 17657 CGATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGA 17598 Query 35727 A 35727 | Sbjct 17597 A 17597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450774785002120