Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1479 208 1e-48 seq2510 114 2e-20 >seq1479 Length=10203 Score = 208 bits (230), Expect = 1e-48 Identities = 524/785 (67%), Gaps = 16/785 (2%) Strand=Plus/Minus Query 69351 GATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAA 69410 ||| || || || || | ||| || ||||| ||| || || |||||||| | || || Sbjct 7272 GATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCATCCTTGTACAACATGAA 7213 Query 69411 CGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTAT 69470 || | || || ||| ||||||| |||| ||| || | ||||| | || || || Sbjct 7212 AGGGTTTCCTGTCTCAGTCTGAGACTCGAGAATGGAGTACCAAAGCTTCTGGGCCTTGAT 7153 Query 69471 TACGGTCTTGTAACGCTTCTCTTTT---TCATATTGT--GTATATAGCCGTTCGAATTCA 69525 ||||||| || ||||| | || |||| ||| | |||| ||||| ||| Sbjct 7152 ---GGTCTTGCGACCCTTCTTCTCCGACTCGTATTTCTCGTAGAGAGCC--TCGAACTCA 7098 Query 69526 TCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCA 69585 || || |||| || |||||||||| ||||| || || ||||| | | ||| || | Sbjct 7097 TCACCGTAAACGTCCGCCAATCCAGGGCATTCGTTGGGGCACATGAGAGTCCAGTCACCG 7038 Query 69586 TCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCT 69644 | | || ||| || ||||| || ||||| || ||||| ||||| || || || || | Sbjct 7037 TTCTTCTCAACACGCTTCATGAAGAGATCCGGGATCCAGAGAGCGTAGAACAAG-TCACG 6979 Query 69645 GGTTCTATTTTCTTCATTTCC-TGTAttttttttAAGATCGAGAAACTCCATAATATCAG 69703 || | ||| || || || || | || | ||| | |||| ||| | | ||||| Sbjct 6978 GGCACGGACTTCCTCCTTGCCGTGGTTCTTCCTCAAGTCCAAGAA-CTCGAAGACATCAG 6920 Query 69704 AATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTA 69763 |||||||| || | ||| || || | | | || || || || || || ||||| || | Sbjct 6919 CGTGCCATGGCTCAACATAGATGGCGAAGGCACCAGGGCGCTTGTTGCCACCCTGGTCAA 6860 Query 69764 TGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCAT 69823 ||||||||||||||| || |||| | ||||| |||| ||||| || || || || | Sbjct 6859 CGTATCTGGCAGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCGTTCGAGTTTCCGT 6800 Query 69824 TTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTC 69883 | || || | ||| || || | || || ||| | || | || || |||| Sbjct 6799 TGGTACCGGCAATGTATGCACCGGTGGCACGGATACGATGGATGTTCAATCCGATACCTC 6740 Query 69884 CTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTAT 69943 | || | || ||||| | ||||| || | ||||||||| |||||||| || |||| Sbjct 6739 CGGCAGTCTTTGAGATCATGGCACATGTCTTGAGTGTGTCATAGATACCCTCAATACTAT 6680 Query 69944 CATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAA 70003 | || |||||| | | || ||| |||| || ||| || || ||||| | Sbjct 6679 CCTCCTTCATGTCGACCAAGAAGCAGGATGACAGCTGGGCCTGTGGTGTACCAGCATTGA 6620 Query 70004 ATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAG 70063 | | ||| || || ||||| ||||| |||| ||| | || |||||||| ||||| | Sbjct 6619 AGAGTGTTGGGGAGGCGTGTGTGAAGTATTTGGAAGACATGAGGTTGTATGTCTCAATGG 6560 Query 70064 CTGATTCTATATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGT 70122 | || |||||| | | | ||||| || | ||| |||||||| | ||| ||||| || Sbjct 6559 CCTTCTCAATATCCTCGCCG-TGAATGCCAACCGCCACACGCATAATCATGTGCTGTGGC 6501 Query 70123 CGTTC 70127 | ||| Sbjct 6500 CTTTC 6496 >seq2510 Length=23295 Score = 114 bits (126), Expect = 2e-20 Identities = 175/249 (70%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||||||||||||| || || |||||||| | || | ||||| || || ||||| Sbjct 9686 GCAGGCGAAGTCAGTGTGGAGACCCTCATCGCGGGAGATGAGCTCGTTGGAGAAAGTGAG 9627 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||| ||| ||||||||||| |||||||| || || | || || || || || ||||| Sbjct 9626 GCCAGCCATGAGACCACGCTTCTTGAGCCAGAAAATAGAGGCGAACGAGCCGGAGAAGAA 9567 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---ATG 39792 ||| || || || || || || ||||| || | || | | | | ||| || || Sbjct 9566 GATACCCTCAACGGCAGCGAAGGCAACCAGGCGCTGGGCAAAGGTGGAATCCTTGTCTTG 9507 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 |||||| | ||||| || || |||||||| | ||||| || || || || ||||| Sbjct 9506 GATCCACCTGACAGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCGATGGCATT 9447 Query 39853 AAAGAGATA 39861 ||||| || Sbjct 9446 GAAGAGGTA 9438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686880130143960