Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1537 105 6e-18 seq1071 89.7 4e-13 >seq1537 Length=49637 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | | ||| ||||| || | || || || || || || |||||||| Sbjct 26389 CCTCCACGAAGTCTCAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAA 26448 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || |||||||| || |||||| | || || ||||| || ||||| || Sbjct 26449 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 26508 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| || | | || | |||||| | | || || Sbjct 26509 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCCACC 26568 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 || || || |||| ||||||||||| || ||||| ||||||||||| |||| Sbjct 26569 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATGACTGC 26621 >seq1071 Length=16463 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || || || ||||||||||||| | | | | || |||||||| || |||||| | Sbjct 874 TCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTCCCATCCTCGAGCTGCTTCCCGGCGAAG 933 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || || ||||| || ||||| || | |||||| ||||| ||||| || | | | Sbjct 934 ATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGAATCTTTGACTTAACGTTG 993 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||||| | ||||| || ||||| || | || || |||| || || ||| Sbjct 994 TCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATGGTCTTTCCAGTCAAGGTCTTGACA 1053 Query 27237 AAGATTTGCATA 27248 || || |||||| Sbjct 1054 AAAATCTGCATA 1065 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || ||||| ||||||||||||| |||| | || || Sbjct 1540 ACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGCTCAGAGTGCGACCATCCTCC 1599 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | ||| || || ||| |||| | ||||| || ||||| || | ||||| || || Sbjct 1600 AACTGCTTGCCCGCGAAAATCAAGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 1659 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | || | |||||| | | ||||| || | ||| || | ||| Sbjct 1660 ATCTTCGACTTCACATTGTCGATAGTGTCAGACGACTCAACCTCCAAAGTGATGGTCTTG 1719 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || || || || || |||||| Sbjct 1720 CCAGTCAGGGTCTTGACGAAAATCTGCATA 1749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424917107692968