Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1071 158 4e-33 seq309 140 1e-27 seq1441 96.9 1e-14 seq1847 93.3 1e-13 >seq1071 Length=16463 Score = 158 bits (174), Expect = 4e-33 Identities = 176/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| | || ||||||||||| || ||||| || | Sbjct 1286 TTTGCATACCACCACGCAGACGCAGAACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGT 1345 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| || || || || ||||| || || || || ||||||||||| || || ||||| | Sbjct 1346 AATCGGACAAGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGT 1405 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || || |||||||| || || | || || || ||||| | ||| |||| Sbjct 1406 CCGGTGGGATACCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCAATGGTATCGGATG 1465 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 1466 ATTCCACCTCAAGCGTGATCGTCTTCCCCGTAAGAGTCTTGACGAAAATCTGCAT 1520 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||||||||| | || ||||| || || || || ||||| Sbjct 1062 CATACCACCACGGAGGCGGAGAACAAGATGTAATGTGGACTCCTTCTGGATGTTGTAATC 1121 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| || || || ||||| || || || || || || || || || || ||||| || || Sbjct 1122 AGACAAAGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAAATCAGGCGCTGCTGGTCCGG 1181 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || ||||| ||||| || | || || ||||| || | ||| || | || Sbjct 1182 TGGGATGCCCTCCTTATCTTGAATCTTGGACTTGACGTTATCGATGGTATCCGACGACTC 1241 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || |||| |||||||||||| || || || || || || ||||| Sbjct 1242 GACTTCCAGCGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 1292 Score = 107 bits (118), Expect = 6e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || || || ||||| || || || || || || Sbjct 1746 CATACCACCACGCAGACGGAGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1805 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || |||||||| ||||| || ||||| ||||||||||| || || Sbjct 1806 GGAGAGGGTGCGGCCGTCCTCAAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGG 1865 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||||| || || || || || || ||| || ||||| || || | ||| || | | Sbjct 1866 GGGAATTCCCTCCTTGTCTTGGATCTT-GCTCTTAACATTGTCGATAGTATCGGAGGACT 1924 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGT 140713 | || ||||| || | ||||| || || Sbjct 1925 CGACCTCAAGGGTGATGGTCTTGCCAGT 1952 Score = 104 bits (114), Expect = 7e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | || || | |||||||| ||| || || || || || || Sbjct 838 CCACCACGAAGACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 897 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || | |||||| || || || || || || ||||| || || ||||| || || || Sbjct 898 AGCGTCCTCCCATCCTCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCCGGTGGG 957 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || || || ||||||||||| || | || || || ||||| | || || | ||||| Sbjct 958 ATACCCTCCTTATCCTGAATCTTTGACTTAACGTTGTCAATGGTGTCTGAAGACTCAACC 1017 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || |||| |||||||| || | || || |||||||||||||| Sbjct 1018 TCGAGAGTAATGGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1064 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || ||||| ||||| || ||||| || || || Sbjct 1518 CATACCACCACGAAGACGAAGGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTC 1577 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || | || || || || || || | || ||||| || || Sbjct 1578 GCTCAGAGTGCGACCATCCTCCAACTGCTTGCCCGCGAAAATCAAGCGCTGCTGGTCCGG 1637 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || |||||||| || | || ||||| || || | ||||| | || Sbjct 1638 AGGAATGCCCTCCTTGTCCTGAATCTTCGACTTCACATTGTCGATAGTGTCAGACGACTC 1697 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || | || | ||||| || || || || || || ||||||||||| Sbjct 1698 AACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAAATCTGCAT 1748 >seq309 Length=11567 Score = 140 bits (154), Expect = 1e-27 Identities = 575/901 (64%), Gaps = 13/901 (1%) Strand=Plus/Plus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 || || |||||||| ||||| || || || || || | | | | | |||| || | Sbjct 1648 ATCGGTATCGATTTGGGTACCACCTACTCGTGCGTGGGTATCTTCAGAGATGACCGCATT 1707 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || ||||| || || || || ||| | ||||| ||||| | |||||| || || || Sbjct 1708 GAGATCATTGCCAACGACCAGGGCAACCGCACAACCCCATCGTTCGTTGCCTTCACTGAC 1767 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| |||| |||||| | || || || |||| || || |||| || || Sbjct 1768 ACCGAGCGTCTGATCGGTGATGCCGCCAAGAACCAAGTCGCCATGAACCCAAGCAACACC 1827 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGAC----AAATCTACACAATC 349437 || || || || ||||| || || ||| | | || | ||| | || || | Sbjct 1828 GTCTTCGACGCCAAGCGTCTGATCGGTCGCAAGTTCGCCGACGCTGAGGTC----CAGGC 1883 Query 349438 TGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGA 349497 || | || || || || || | | | || | ||| || | || ||| || | Sbjct 1884 CGACATGAAGCACTTCCCATTCAA-GATCATCGACAAG--GGAGGAAAGCCAGTTTGCCA 1940 Query 349498 GGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 ||| || | || || || || | || |||||| || || || || ||| | | Sbjct 1941 GGTCGAGTTCAAGGGCGAGACCAAGGACTTCACACCCGAGGAGATCTCCTCCATGATCCT 2000 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 || || ||| || | ||||| || || | || | ||| || | | |||||| | Sbjct 2001 CGTCAAGATGCGTGAGACCGCTGAGGCTTACCTCGGAGGAACCGTCAACAACGCTGTTGT 2060 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 || || || || || || || || ||||||| || || || |||||||| || Sbjct 2061 CACCGTCCCCGCTTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCTGGTCTGAT 2120 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 || || | || || || | || || || || || || ||||| || ||||| || || Sbjct 2121 CGCCGGACTCAACGTCCTCCGTATCATCAACGAGCCTACCGCTGCTGCCATTGCTTACGG 2180 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || || | | || || || |||| || || ||| | |||||||| || Sbjct 2181 TCTCGACAAGAAGGTCGAGGGTGAGCGCAACGTTCTCATCTTCGATCTTGGTGGTGGAAC 2240 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 ||| ||||| || || || || | || ||||| || || || || || | |||||||| Sbjct 2241 TTTCGATGTCTCTCTCCTCACCATCGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCTGG 2300 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 ||| || || | ||||| || || || || || ||||| || || || || || || Sbjct 2301 TGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAACCACTTCGTCAACGA 2360 Query 349918 ATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAA 349976 || ||| | |||| || | || | ||| | | || | ||||| || Sbjct 2361 GTTCAAGAG-AAAGCACAAGAAGGACCTCTCTTCCAATGCCCGTGCCCTCCGTCGTCTCC 2419 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 | || || || || ||||| ||||| | | || || || | || ||||| || || | Sbjct 2420 GCACAGCATGCGAGCGTGCCAAGCGCACTCTTTCGTCCTCTGCACAGACCTCCATCGAGA 2479 Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 | || ||||| || || | ||||||| | ||||| || ||||| || ||||| | Sbjct 2480 TCGACTCTCTCTTCGAGGGTATTGATTTCTACACCTCTATCACCCGTGCCCGCTTTGAGG 2539 Query 350097 A 350097 | Sbjct 2540 A 2540 >seq1441 Length=55341 Score = 96.9 bits (106), Expect = 1e-14 Identities = 104/137 (76%), Gaps = 3/137 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| | || || ||| || || | ||||||||||| ||||||||||| Sbjct 8067 CGCGGCACACCAAGGGTGACGTTC---TTTGACGACACACCAGCAAAATGGAAAGTATTG 8011 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || || | ||||||||||| ||||| || |||| || |||||||| || Sbjct 8010 AGCGTCATCTGCGTGGCAGGCTCACCAATAGACTGGGCGGCAAGAATACCAACCATCTCA 7951 Query 377578 CCAGGATTGACAATAGC 377594 ||||| ||||| | ||| Sbjct 7950 CCAGGGTTGACCAAAGC 7934 Score = 95.1 bits (104), Expect = 4e-14 Identities = 213/320 (67%), Gaps = 0/320 (0%) Strand=Plus/Minus Query 378127 CCATCATCTCCATATGAGAATTGAACAATTTTATCTTTATTGTTTCTTACAGTCATATCA 378186 ||||| ||||| || ||||| ||||| | | | ||| || || || |||| Sbjct 7377 CCATCCTCTCCGTAGATAAATTGGACAATGTCGCCCAGAGAGTTCCTGACGGTACCATCA 7318 Query 378187 TATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGA 378246 || | ||||| | ||| || | ||||| | || || || ||| |||||||||| Sbjct 7317 TACTTGACCATGACATCCTCCAGAGCTTTGACGAGACGACGCTGAATGTAACCAGTTTCG 7258 Query 378247 CTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAAT 378306 ||| || || ||||||||||| | ||| |||||||| |||| || ||||| || ||| Sbjct 7257 GCAGTCTTGACAGCAGTATCAATAAGACCCTCACGACCAGCCATAGCGTGGAAAAAGAAT 7198 Query 378307 TCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAA 378366 || | || ||||| || | | | || | |||| ||| || | | | || || Sbjct 7197 TCCGATGGTGTAAGCCCTCTCAGGTACGAGTTTTCAACAAAGCCACGAGACTCGGGAGAG 7138 Query 378367 TCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTT 378426 | ||||| ||||| |||| || | || || | || ||||| | ||||| || || Sbjct 7137 TAATCATCCTTTGTGAAATGCGGCAGGGTGCGGTACTTGAACCCGAAGGGAATACGCTTA 7078 Query 378427 CCATCAACATTCTGTTGACC 378446 || || ||| |||||| || Sbjct 7077 CCCTCCACAGACTGTTGCCC 7058 >seq1847 Length=30800 Score = 93.3 bits (102), Expect = 1e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || || || | || || ||||| ||||| || || ||||||||||| Sbjct 17775 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGATC 17716 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || || ||||| || ||||||||||| || || ||||| || || | || ||||| || Sbjct 17715 AGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 17656 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 || | ||| || | || || ||||| || | ||||| || || Sbjct 17655 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGT 17612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515189575996217