Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1479 219 5e-52 seq2510 123 3e-23 >seq1479 Length=10203 Score = 219 bits (242), Expect = 5e-52 Identities = 481/714 (67%), Gaps = 24/714 (3%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAG--CCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 |||||| ||| || | ||| ||||| ||||| || |||||| | ||||| || ||| Sbjct 6564 TGAGACATACAACCTCATGTCTTCCAAA--TACTTCACACACGCCTCCCCAACACTCTTC 6621 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 || |||||||| || | ||| |||| ||||||| |||| | |||||||| || Sbjct 6622 AATGCTGGTACACCACAGGCCCAGCTGTCATCCTGCTTCTTGGTCGACATGAAGGAGGAT 6681 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 || || || ||||| || || |||||| |||||| ||||| ||| | || Sbjct 6682 AGTATTGAGGGTATCTATGACACACTCAAGACATGTGCCATGATCTCAAAGACTGCCGGA 6741 Query 53420 GGTATCGGTATCCACTGC--TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGA 53477 |||||||| | || | ||| | ||||||| | ||| || || || || | Sbjct 6742 GGTATCGGATTGAACATCCATCGTA--TCCGTGCCACCGGTGCATACATTGCCGGTACCA 6799 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 |||| | | | || ||||| || ||||||||||||||||||||||| ||| | |||| Sbjct 6800 ACGGAAACTCGAACGGTATCGTTCCCATGCTCCGCGTCTTCAACAACACTGCCAGATACG 6859 Query 53538 TCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACG 53597 | |||||||||| |||||| || | ||||||||||| | ||||| ||||||| Sbjct 6860 TTGACCAGGGTGGCAACAAGCGCCCTGGTGCCTTCGCCATCTATGTTGAGCCATGGCACG 6919 Query 53598 CCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCC 53657 | || | | ||||| | || || | ||| || || | || || | || || Sbjct 6920 CTGATGTCTTCGAGTTCTTGGACTTGAGGAAGAACCACGGCAAGGAGGAAGTCCGTGCCC 6979 Query 53658 GTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGAC 53716 ||||| |||| ||| ||||| ||||| ||||| ||||||||| | || |||||| || Sbjct 6980 GTGACTTGTTCTAC-GCTCTCTGGATCCCGGATCTCTTCATGAAGCGTGTTGAGAAGAAC 7038 Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAG 53776 | || ||| || |||||||| ||||| ||||| || | || || |||||||| Sbjct 7039 GGTGACTGGACTCTCATGTGCCCCAACGAATGCCCTGGATTGGCGGACGTTTACGGTGAT 7098 Query 53777 GAGTTTAACGAGATGTATCGGACGTACGCAGT-------TCAGGGCCGCTACAAGAAGAA 53829 ||||| | | | || || |||| ||| |||| ||| |||| Sbjct 7099 GAGTTCGAGGCTCTCTACGAGAAATACG-AGTCGGAGAAGAAGGGTCGC------AAGAC 7151 Query 53830 GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCC 53889 ||||||| | || | ||| | | || ||| || ||| ||||| |||| || Sbjct 7152 CATCAAGGCCCAGAAGCTTTGGTACTCCATTCTCGAGTCTCAGACTGAGACAGGAAACCC 7211 Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 | ||||| ||||||||| | |||| |||||||||||||||||| |||| Sbjct 7212 TTTCATGTTGTACAAGGATGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGG 7265 Score = 131 bits (144), Expect = 2e-25 Identities = 300/446 (67%), Gaps = 7/446 (2%) Strand=Plus/Plus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 ||||||||||| ||||| ||||| ||||| || || ||||| | ||||| | ||| | Sbjct 7786 CGCAACTCCCTTCTCGTTGCGCCCATGCCCACTGCTTCGACCTCCCAGATTCTCGGCTTC 7845 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| | ||||||||| |||||| ||| || |||||| Sbjct 7846 AACGAGTGCTTCGAGCCATACACCTCGAACATCTACTCGCGCCGTGTCCTGGCTGGTGAG 7905 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 || | ||||| | |||| ||| || | || |||| Sbjct 7906 TTCCAAGTTGTCAACCCTTGGTTGCTCAAAGACTTGGTCGACATGGGACTGTGGTCTGAC 7965 Query 55664 CAGATCAAGA--CGGATATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGATTCC 55719 | || |||| || || | |||||| ||| || ||| ||||||| || | ||| Sbjct 7966 AACATGAAGAACCGCATCAT-TGCGGA-CGGAGGATCCATCCAGAACATCCCCAACATCC 8023 Query 55720 TCTGCG-TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTG 55778 || | |||||| | ||| |||||| |||||||| | ||| | | | Sbjct 8024 CGGCCGATATCAAGGCTCTCTACAAGACGGTCTGGGAGATCTCCCAGCGCACCATTGTCC 8083 Query 55779 ACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGG 55838 | ||| ||||| |||||||| | |||||| ||||||||||| || |||||| |||| Sbjct 8084 AGATGGCCGCTGACCGTGGTGCCTTCATCGATCAGTCCCAGTCCCTCAACATCCACATGA 8143 Query 55839 AGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCA 55898 || | || || ||| |||| | | ||| ||||||||| || |||||| || |||| Sbjct 8144 AGGACCCAACAATGGGCAAGATCACCTCCATGCACTTTGCTGGCTGGAAGCTCGGCCTCA 8203 Query 55899 AGACGGGTATGTACTATCTGCGGACC 55924 |||| || |||||||| || || ||| Sbjct 8204 AGACCGGCATGTACTACCTCCGTACC 8229 >seq2510 Length=23295 Score = 123 bits (136), Expect = 3e-23 Identities = 542/839 (65%), Gaps = 34/839 (4%) Strand=Plus/Minus Query 74470 CGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGA 74529 |||| ||||| ||||| ||||||||||| ||| ||| |||||||||||||| |||||| Sbjct 9963 CGACACGCTTCTCAAAGAAGTTGGTCTTTCCTGCCAGGGAGATGTTCTCCATGAAGTCGA 9904 Query 74530 AAGGGTTCTTTGCACCGTAAATAGGCTTCTC----CCCAAACTGTGCCATGAGGCGATCC 74585 | ||||| | | ||| | |||||| || | | || | || | || Sbjct 9903 AGGGGTTGGTAGACTTGTAGAA---CTTCTCGTTACCGAGAGAAAGC-AGCAGCCTGTCG 9848 Query 74586 GCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGC 74645 || || || | |||||| ||| |||| || | |||||||| || || || Sbjct 9847 GCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGCAGCGCACATGGG 9788 Query 74646 AGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCC-CATTG--GACAATCTTGTGA 74702 |||||||| || | ||||| ||| | | || |||| | || |||| || || || Sbjct 9787 AGTGCCTCTGTCAAGAACTCTTGCTCGATCGCGACAGCCTCGGTGATGACA-TCCTG-GA 9730 Query 74703 ATGTCT--TTGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGCAAACTCC 74759 | || ||| |||| | | || ||||| ||| | || | || ||| || || Sbjct 9729 CAGCCTGCTTGCTTGGGCGGTGT---CTAAGGTGCGAGAAGAGGAGGCA-GGCGAAGTCA 9674 Query 74760 TGATGCGAG-CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAG 74818 || ||| || ||||| | | || | || || || || | ||||||| ||| || Sbjct 9673 GTGTG-GAGACCCTCATCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCAGCCATGAG 9615 Query 74819 TCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGAC 74878 ||||||||||| | ||| || || | ||| || || ||||||||| || || || Sbjct 9614 ACCACGCTTCTTGAGCCAGAAAATAGAGGCGAACGAGCCGGAGAAGAAGATACCCTCAAC 9555 Query 74879 ACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTC----ATCCAAGTCT 74934 || ||||| || ||||| || || || | | ||| ||| ||||| | Sbjct 9554 GGCAGCGAAGGCAACCAGGCGCTGGGCAAAGGTGGAATCCTT-GTCTTGGATCCACCTGA 9496 Query 74935 GAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTG 74994 |||||| || || || |||| ||||| || ||||| || | ||||||| || Sbjct 9495 CAGCCCAGTCGGCCTTCTTCTTGATGCAAGGGATGGTCTCGATGGCATTGAAGAGGTATG 9436 Query 74995 CCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAA 75054 || | | ||||||| | |||| || | || ||||| ||||| | |||| Sbjct 9435 TGCGCTGGGCCTGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTATGTCTCGGCGTGAA 9376 Query 75055 TCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCT 75114 | |||| | | ||| | ||||||| | || ||||||| || || || || Sbjct 9375 TGTTCTCGATCATGATTTGGAAACCGTAGAAGCAGCGGGCCTCTGGGATTTGAACCTCGC 9316 Query 75115 T--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGC 75172 | |||| || | || ||||| |||| || ||||| || |||||||| ||||| Sbjct 9315 TGCTGAAGCGCTCGAG--GAGGTTCTCGTTGACAATTCCGTCAGACGCGGCGAAGAAAGC 9258 Query 75173 CAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGA---GTTTGTCCCAATCCTTCAG 75229 || || ||| |||| ||||||||||||| ||| | |||| ||| || | || Sbjct 9257 GAGAACGTGGGAGATGAAGTAGCGCTCATCGTCATTGAGACGGTTGTTCCAGTCGTGAAG 9198 Query 75230 GTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACA 75288 |||| | | ||||||||||| | ||||||||| | | |||||| ||||||| Sbjct 9197 GTCCTTGGAGAGGTCAATCTCCTCTGCAGTCCAGAAAGACGCTTCCGCCTTCTTGTACA 9139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547193160572200