Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1071 118 9e-22 >seq1071 Length=16463 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || ||||| || || ||| | || || ||||| |||||| | ||| Sbjct 1520 ATGCAGATTTTCGTCAAGACTCTTACGGGGAAGACGATCACGCTTGAGGTGGAATCATCC 1461 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || || || || || || || || ||||| || || Sbjct 1460 GATACCATTGACAACGTGAAGTCGAAGATCCAGGATAAGGAGGGTATCCCACCGGACCAG 1401 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || || || || |||| || | ||| | |||||||||||| Sbjct 1400 CAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCTTGTCCGATTACAAC 1341 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | || |||||| ||||| |||| ||||| || Sbjct 1340 ATTCAGAAGGAGTCTACTCTGCACTTGGTTCTGCGTCTGCGTGGTGGTAT 1291 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || ||| | || || || |||| Sbjct 1748 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTTGAGTCGTCT 1689 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || ||||| ||||| || ||||| || || || || Sbjct 1688 GACACTATCGACAATGTGAAGTCGAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAG 1629 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||| ||||| || ||||| || || || | ||| |||||| Sbjct 1628 CAGCGCTTGATTTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACTCTGAGCGACTACAAC 1569 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || ||||| | ||| | || ||||| || Sbjct 1568 ATTCAGAAGGAGTCGACTCTCCACTTGGTCCTTCGTCTTCGTGGTGGTAT 1519 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| ||||| ||| | ||||| || ||||| || |||| Sbjct 1292 ATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACAATTACGCTGGAAGTCGAGTCGTCG 1233 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| || |||||||| || || ||||| ||||| || || Sbjct 1232 GATACCATCGATAACGTCAAGTCCAAGATTCAAGATAAGGAGGGCATCCCACCGGACCAG 1173 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| ||||| || | || || | || | || ||||||||| Sbjct 1172 CAGCGCCTGATTTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACTTTGTCTGATTACAAC 1113 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || |||||| | ||| | || | || ||||| || Sbjct 1112 ATCCAGAAGGAGTCCACATTACATCTTGTTCTCCGCCTCCGTGGTGGTAT 1063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434900247593280