Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudogymnoascus_20sp._20VKM_20F-
3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq1071 98.7 7e-16
>seq1071
Length=16463
Score = 98.7 bits (108), Expect = 7e-16
Identities = 142/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || ||||| || || || || |||||| | || ||||| || |
Sbjct 1748 ATGCAGATTTTCGTCAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTTGAGTCGTCT 1689
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| | || ||| | || | || ||| ||||| || || | || || || ||
Sbjct 1688 GACACTATCGACAATGTGAAGTC-GAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCA 1630
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| || || || || ||||| || |||| || | |||||| | |||| |||||
Sbjct 1629 GCAGCGCTTGATTTTCGCGGGCAAGCAGTTGGAGGATGGTCGCACTCTGAGCGACTACAA 1570
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 1569 CATTCAGAAGGAGTCGAC 1552
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || || ||||| ||||| || || || || ||||| || || ||
Sbjct 1292 ATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACAATTACGCTGGAAGTCGAGTCGTCG 1233
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || | || | | || || ||| || || || || | || || || ||
Sbjct 1232 GATACCATCGATAACGTCAAGTCCAAGATTCAAGATAAGGAGGGCATCCCACCGGACCAG 1173
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||||| | || || || ||||| || || || || | || ||||| |||||||||
Sbjct 1172 CAGCGCCTGATTTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACTTTGTCTGATTACAAC 1113
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| || || ||||||||||||||| | |||
Sbjct 1112 ATCCAGAAGGAGTCCACATTACATCTTGTT 1083
Score = 86.0 bits (94), Expect = 4e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||||||||| || || || ||||| || |||||||| || || || || || |
Sbjct 1520 ATGCAGATTTTCGTCAAGACTCTTACGGGGAAGACGATCACGCTTGAGGTGGAATCATCC 1461
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| || |||| | | || || || || || || ||| | || || || ||
Sbjct 1460 GATACCATTGACAACGTGAAGTCGAAGATCCAGGATAAGGAGGGTATCCCACCGGACCAG 1401
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||||| | || ||||| || || || ||||| || | ||||| || ||||||||||
Sbjct 1400 CAGCGCCTGATCTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCTTGTCCGATTACAAC 1341
Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| || || ||||| || | || || |||
Sbjct 1340 ATTCAGAAGGAGTCTACTCTGCACTTGGTT 1311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337995845016212
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |