Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1537 152 1e-31 seq1071 143 6e-29 seq3072 125 2e-23 seq1847 120 7e-22 >seq1537 Length=49637 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| ||| | ||| |||||||| || || |||| ||||| || | | || Sbjct 26394 ACGAAGTCTCAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGT 26453 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| || || || ||||| || ||||| || Sbjct 26454 GCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCC 26513 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||| ||||| || | ||||| || | Sbjct 26514 CTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGACGACTCCACCTCAAG 26573 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||||| || || | ||| | |||||| Sbjct 26574 GGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 26615 >seq1071 Length=16463 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| ||||| || || || || | |||||||||| ||| || Sbjct 1299 ACGCAGACGCAGAACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTAATCGGACAAGGT 1358 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||| ||||| || || || ||||| || || ||||| Sbjct 1359 GCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACC 1418 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || |||||||| |||||| || ||||| || || | |||||| || | Sbjct 1419 CTCCTTATCCTGGATCTTCGACTTCACGTTGTCAATGGTATCGGATGATTCCACCTCAAG 1478 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||| ||||| | ||| || | ||| | ||||| Sbjct 1479 CGTGATCGTCTTCCCCGTAAGAGTCTTGACGAAAATCTGCAT 1520 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||| ||||| || || |||| ||||| |||| | || | || || Sbjct 1765 AGGACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 1824 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| || ||||| ||||| || ||||| || ||||||||| Sbjct 1825 TCAAGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCT 1884 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||| || || |||| || || || | ||||| ||| Sbjct 1885 TGGATCTTGCTCTTAACATTGTCGATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTC 1944 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 1945 TTGCCAGT 1952 Score = 122 bits (134), Expect = 2e-22 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| |||||| || || |||| ||||| ||| || || Sbjct 843 ACGAAGACGGAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGT 902 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 |||||||| || ||||||||||| |||||||| || || || ||||| || || ||||| Sbjct 903 CCTCCCATCCTCGAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCCGGTGGGATACC 962 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || || |||||| ||| || || ||||||||||| | || || || | Sbjct 963 CTCCTTATCCTGAATCTTTGACTTAACGTTGTCAATGGTGTCTGAAGACTCAACCTCGAG 1022 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 || || ||||| || ||||| || || Sbjct 1023 AGTAATGGTCTTTCCAGTCAAGGTCTT 1049 >seq3072 Length=1730 Score = 125 bits (138), Expect = 2e-23 Identities = 197/277 (71%), Gaps = 5/277 (2%) Strand=Plus/Plus Query 7444 TTATATTTAATATTTGGTGGCTTTTCTGGTATTAT-AGGTACTATATTTTCTATGATTAT 7502 |||||||||||||||| | ||||| || ||||| |||||| ||||| | | || Sbjct 1 TTATATTTAATATTTGCTTTATTTTCAGG-ATTATTAGGTACAGCTTTTTCAGTTTTAAT 59 Query 7503 AAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAA 7562 || ||||||||| || || ||| |||| ||| || | | | ||| | || || Sbjct 60 CAGATTAGAATTAAGTGGACCTGGTGTTCAA-TATATAGCAG--ACAATCAATTATATAA 116 Query 7563 CGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGAT 7622 | ||| || || || || || | | |||||||||||| | |||||||| | |||||| Sbjct 117 CAGTATAATAACAGCACACGCTATATTAATGATTTTCTTTATGGTTATGCCTGCTATGAT 176 Query 7623 AGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCC 7682 ||| || || || |||| || | ||| | | | || | |||||||||||| ||||| Sbjct 177 AGGAGGATTTGGTAATTTTTTACTACCTCTTTTAGTAGGGGGTCCTGATATGGCATTTCC 236 Query 7683 AAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || | || ||||||||||| |||||| |||| ||| Sbjct 237 TAGATTAAATAATATAAGTTTCTGATTATTACCACCT 273 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||||||||| || |||||||| | |||||| || | ||||| || || || || | Sbjct 678 TTCAGGATGACCGAAGAATCAGAAAAGATGTTGGTATAATATAGGGTCACCACCACCAGC 619 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773 | ||||| || |||||||||||||||||||||||||| Sbjct 618 AGCTTCAAAGAATGATGTATTAAAATTTCTATCAGTTAAAAC 577 >seq1847 Length=30800 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | ||| | ||||| || |||||||| ||||| ||||| Sbjct 17775 TTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGATC 17716 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| || ||||| || |||||||| |||||||| ||| ||| ||| Sbjct 17715 AGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCG 17656 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 || || || |||| || || || | ||||| |||||||||||||| || || | ||| Sbjct 17655 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGAA 17597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192480182397266