Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3557_20[genbank_20GCA_5F000750665.1_202014-09-09] 3,339 sequences; 27,649,855 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1537 152 4e-32 seq1071 147 2e-30 seq1847 105 5e-18 >seq1537 Length=49637 Score = 152 bits (168), Expect = 4e-32 Identities = 168/222 (76%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||||||| |||| |||||| ||| |||||| ||||||||||| || | || ||| Sbjct 26398 AGTCTCAAGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGG 26457 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || || |||||||| ||||| ||||||| |||||||| || | || | || ||| Sbjct 26458 CCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATTCCCTCC 26517 Query 44240 TTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCG 44297 || ||| ||||| ||| || ||| | || ||||||| || |||||||| | | Sbjct 26518 TTGTCCTGGATCTTGGACTTGACATTGT--CGATAGTGTCGGACGACTCCACCTCAAGGG 26575 Query 44298 TAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 | || ||||| ||||| ||||||||||||||||||||||||| Sbjct 26576 TGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATGA 26617 >seq1071 Length=16463 Score = 147 bits (162), Expect = 2e-30 Identities = 175/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || |||| ||| || || |||||| || |||||||| Sbjct 1287 TTGCATACCACCACGCAGACGCAGAACCAAGTGCAGAGTAGACTCCTTCTGAATGTTGTA 1346 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 ||||| | || | ||| | || ||||||||||| || |||||||||| |||||||| | Sbjct 1347 ATCGGACAAGGT-GCGGCCATCCTCCAGCTGCTTACCAGCAAAGATCAGGCGCTGCTGGT 1405 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGG 44282 | | || | ||| ||||| ||| |||||| ||||| | | ||||| |||| | Sbjct 1406 CCGGTGGGATACCCTCCTTATCCTGGATCTTCGACTTCACGTTGTCAATGGTATCGGATG 1465 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||| | ||| |||||||| ||||| || ||||| ||||| || ||||| Sbjct 1466 ATTCCACCTCAAGCGTGATCGTCTTCCCCGTAAGAGTCTTGACGAAAATCTGCAT 1520 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| ||||||||||| ||||||||||| ||| || | | | || || Sbjct 855 CACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTCCCATCCTC 914 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||||||||| ||||||| |||||||| || | || | ||| ||||| ||| Sbjct 915 GAGCTGCTTCCCGGCGAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCCTG 974 Query 44248 TATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| || | || ||| | |||||||| | || || ||||| | ||||| |||| Sbjct 975 AATCTT-TGACTTAACGTTGTCAATGGTGTCTGAAGACTCAACCTCGAGAGTAATGGTCT 1033 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || | |||||| || || || ||||| Sbjct 1034 TTCCAGTCAAGGTCTTGACAAAAATCTGCAT 1064 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44146 CTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAA 44205 |||||| |||||||||||||| | | || | || || |||||||| || || || Sbjct 1101 CTCCTTCTGGATGTTGTAATCAGACAAAGTACGGCCATCCTCGAGCTGCTTGCCCGCGAA 1160 Query 44206 GATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGT 44265 |||| |||||||| || | || | || ||||| || ||||| ||| | | Sbjct 1161 AATCAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGAATCTTGGACTTGACGTT 1220 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | ||||| || | || || || |||| |||||| |||||||| ||||| ||||| || Sbjct 1221 ATCGATGGTATCCGACGACTCGACTTCCAGCGTAATTGTCTTTCCGGTGAGAGTCTTGAC 1280 Query 44326 GAAGATTTGCAT 44337 |||||||||||| Sbjct 1281 GAAGATTTGCAT 1292 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || ||| |||||| ||||||||||| |||| ||| ||| |||| || Sbjct 1768 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCA 1827 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| ||||||| ||| ||||| || | || | || ||||| || Sbjct 1828 AGTTGCTTTCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCTTGG 1887 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | || || |||| ||| || ||||| | || || |||| Sbjct 1888 ATCTTGCTCTTAACATTGT--CGATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCT 1945 Query 44307 TTCCCGTGA 44315 | || |||| Sbjct 1946 TGCCAGTGA 1954 >seq1847 Length=30800 Score = 105 bits (116), Expect = 5e-18 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| |||| || ||| | || || |||||||| || ||||||| Sbjct 17777 CCTTCTGGATGTTGTAGTCGGAAAGAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGA 17718 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| |||||||| || | ||| | || ||||| ||| |||||| ||| || ||| Sbjct 17717 TCAGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATCTTCGACTTGACATTGT 17658 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || || |||| ||| || ||||| | || || ||||| ||||| | |||||| || Sbjct 17657 --CGATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGAC 17600 Query 44326 GAAG 44329 |||| Sbjct 17599 GAAG 17596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359975750528163