Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3646 132 6e-26 >seq3646 Length=8928 Score = 132 bits (146), Expect = 6e-26 Identities = 369/560 (66%), Gaps = 12/560 (2%) Strand=Plus/Plus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || ||||| || ||| ||||||||||| | ||| | ||||| || || || || Sbjct 1188 CAGGCGAAGTCAGTGTGGAGACCCTCGTCGCGGGAAATGAGCTCGTTAGAGAAGGTAAGG 1247 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || | ||| ||||||||||| |||||||| || ||||| || || || ||||| |||||| Sbjct 1248 CCAGCCATGAGGCCACGCTTCTTAAGCCAGAAAATGGATGCGAAGGAGCCAGAGAAGAAA 1307 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGT 24311 || || || || || || ||||||| || | | | | | | |||| || Sbjct 1308 ATACCCTCAACGGCAGCGAAGGCAACGAGACGCTGGGCGAAGGTAGAATCCTTGTCTTGG 1367 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 |||||| | |||||||||||||||||| || | ||||| || ||||| || ||||| Sbjct 1368 ATCCACCTGACAGCCCAATCGGCCTTCTTCTTGATGCAAGGAATGGTCTCGATGGCATTG 1427 Query 24372 AAGAGATAGtttttttCA--TTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 24429 ||||| || | || | || | || || | ||||| ||||| | || || Sbjct 1428 AAGAGGTATGTGCGTTGAGCTTGC--TCCTTGATGTATGTGTCAATGAGGAGGGAGTATG 1485 Query 24430 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 24489 | || | |||||||| || || ||||| || |||||||| || | || || | | Sbjct 1486 TCTCGGCGTGAATGTTCTCGATCATAATTTGGAAACCGTAGAAGCAGCGGGCTTCTGGGA 1545 Query 24490 TCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 24549 | || || || | | || || || | || || || || |||||||| || | Sbjct 1546 TTTGGACCTCGCTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTCCGACGCGG 1605 Query 24550 CAAAAAACGCCAATACATGTTTTATAAAATA---TTTTTCGTCTGGTG-TTAGTTTATTC 24605 | || || || | || || || || || | ||||| | || | || ||| Sbjct 1606 CGAAGAAAGCGAGAACGTGGGAGATGAAGTAGCGCTCATCGTC-GTTGAGGCGGTTGTTC 1664 Query 24606 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 24665 || || | || || || || | ||| | || || ||||||| || || ||||| ||| Sbjct 1665 CAGTCGTGGAGGTCCTTGGAGAGATCAATCTCCTCTGCTGTCCAGAAAGAGGCCTCCGCC 1724 Query 24666 TTTTTATACATATTCCAGAT 24685 || || ||||| | |||||| Sbjct 1725 TTCTTGTACATCTGCCAGAT 1744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593670539942400