Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudogymnoascus_20sp._20VKM_20F-
3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq977 122 7e-23
seq4873 104 2e-17
seq4907 84.2 2e-11
>seq977
Length=6114
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| ||||| |||||||||||| |||||||| ||||||| |
Sbjct 4990 CCACCACGAAGACGGAGAACCAAATGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAC 4931
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| ||| || | ||||||| ||| ||||| || |||| || | |||||||||| ||
Sbjct 4930 AAGGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCCGGAGGA 4871
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| ||||| || || | | ||| |||||| | |||
Sbjct 4870 ATACCCTCCTTGTCTTGAATCTTGCTCTTAACATTGTCGATAGTATCGGATGATTCCACC 4811
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||||| |||||||| || | || |||||||| || |||||
Sbjct 4810 TCGAGCGTAATCGTCTTGCCCGTAAGAGTCTTGACAAAAATCTGCAT 4764
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| || | ||| |||||||||||||| |||||||| || || | |
Sbjct 5218 CCACCGCGGAGACGGAGAACAAGATGTAAAGTGGACTCCTTCTGAATGTTGTAATCAGAC 5159
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | ||||| ||||| ||||||||| |||| || | |||||||||| ||
Sbjct 5158 AGAGTACGGCCATCCTCTAGCTGCTTGCCCGCAAAAATTAGGCGCTGCTGGTCCGGTGGG 5099
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| ||||| || |||||| || || | ||| ||||| | |||
Sbjct 5098 ATGCCCTCCTTATCTTGGATCTTAGACTTGACGTTATCGATGGTATCCGACGACTCGACC 5039
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||||| ||||| ||||| | || ||||| || ||||||||
Sbjct 5038 TCCAACGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 4992
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | ||| |||| || | |||||||||||| || ||||| ||||| |
Sbjct 4534 CCACCACGCAGACGGAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 4475
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || ||||||| || || ||||| || | || || | ||||||||| |||
Sbjct 4474 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGA 4415
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| ||||| || || | | ||| ||||| || |||
Sbjct 4414 ATTCCCTCCTTGTCTTGAATCTTGCTCTTAACGTTGTCGATGGTATCGGAGGACTCGACC 4355
Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151
|| | ||| ||||||||||| ||
Sbjct 4354 TCAAGGGTGATGGTCTTGCCAGT 4332
>seq4873
Length=13461
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || || || |||| || | |||||||||||| || ||||| |||||||
Sbjct 6159 CCTCCACGGAGTCTCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAA 6218
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || | ||||| ||||| ||||| || | || | | |||||||||| |||
Sbjct 6219 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 6278
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| |||||| || || | | ||| ||| || | ||||
Sbjct 6279 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCCACC 6338
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| | ||| || |||||||| || | || || || || ||||||||
Sbjct 6339 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 6385
>seq4907
Length=24529
Score = 84.2 bits (92), Expect = 2e-11
Identities = 127/181 (70%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 20986 CCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAA 21045
|||| || ||||| ||||| | ||||| | | ||||| ||||| ||||| ||| | |
Sbjct 4491 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGA 4432
Query 21046 TAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGC 21105
| || | |||||||||| || | || |||||||| |||||| || || | |
Sbjct 4431 TCAGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCTTGGATCTTCGACTTGACATTGT 4372
Query 21106 CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAA 21165
||| |||||| || ||| || | ||| ||||||||||| || || || ||||| |
Sbjct 4371 CGATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGA 4312
Query 21166 A 21166
|
Sbjct 4311 A 4311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422223793566080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |