Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3646 313 3e-80 seq977 132 5e-26 seq4873 123 3e-23 seq4907 105 7e-18 >seq3646 Length=8928 Score = 313 bits (346), Expect = 3e-80 Identities = 561/813 (69%), Gaps = 25/813 (3%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||| ||||| || |||||||| | |||||| | || || Sbjct 1744 ATCTGGCAGATGTACAAGAAGGCGGAGGCCTCTTTCTGGACAGCAGAGGAGATTGATCTC 1685 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||| | ||| | |||||| | |||||| | |||||| Sbjct 1684 TCCAAGGACCTCCACGACTGGAACAACCGCCTCAACGACGATGAGCGCTACTTCATCTCC 1625 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || |||||||| ||||| || ||||||||||| || ||||||| Sbjct 1624 CACGTTCTCGCTTTCTTCGCCGCGTCGGACGGAATTGTCAACGAGAACCTCCTCGAGCGC 1565 Query 116813 TTCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCAT 116871 ||| ||| ||||| || | | || || || ||||||||||| || || || || Sbjct 1564 TTCAG-CAGCGAGGTCCAAATCCCAGAAGCCCGCTGCTTCTACGGTTTCCAAATTATGAT 1506 Query 116872 GGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGA 116931 |||||| | ||| | || | || || |||||| ||||| ||| | | Sbjct 1505 CGAGAACATTCACGCCGAGACATACTCCCTCCTCATTGACACATACATCA---------A 1455 Query 116932 GGAG-AAGCTC------CGTT--TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGA 116982 |||| |||||| | | | || || ||||||||||| || || ||| |||| | Sbjct 1454 GGAGCAAGCTCAACGCACATACCTCTTCAATGCCATCGAGACCATTCCTTGCATCAAGAA 1395 Query 116983 GAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCT 117042 ||||||||| ||||| | | |||||| | || || | |||||| | |||| || Sbjct 1394 GAAGGCCGATTGGGCTGTCAGGTGGATCCAAGACAAGGATTCTACCTTCGCCCAGCGTCT 1335 Query 117043 GGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTG 117102 || |||||||| ||||| ||||| | ||||| || ||| ||||| |||| || || Sbjct 1334 CGTTGCCTTCGCTGCCGTTGAGGGTATTTTCTTCTCTGGCTCCTTCGCATCCATTTTCTG 1275 Query 117103 GCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGA 117162 ||| ||||| || ||||||||| | ||||| || ||| ||||||||||| ||| | || Sbjct 1274 GCTTAAGAAGCGTGGCCTCATGGCTGGCCTTACCTTCTCTAACGAGCTCATTTCCCGCGA 1215 Query 117163 CGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAG 117222 ||||||||| || ||||| ||||| | || ||| || | || || || || Sbjct 1214 CGAGGGTCTCCACACTGACTTCGCCTGCCTCCTCTTCTCTCACCTTAAACACCGCCCAAG 1155 Query 117223 CGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCAC 117282 | | | |||| || || | ||||| || || ||| ||||| ||||| || Sbjct 1154 CAAGCAGGCCGTCCAAGACGTCATTACCGAGGCTGTTAGCATTGAGCAAGAGTTCCTGAC 1095 Query 117283 CGAAGCGC-TGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCG 117341 ||| || | | || ||||| ||||| || | || | | |||| ||||||||| | Sbjct 1094 CGAGGCACTTCCCTGTGCG-CTGCTCGGCATGAACGCCAACTTGATGAAGCAATACATTG 1036 Query 117342 AGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCA 117401 |||||||||||||||||||||| || || | | || ||| |||||| || ||| Sbjct 1035 AGTTCGTCGCCGACAGGCTGCTTCTTTCTCTCGGCAACGAGAAGTTCTACAAATCGGCCA 976 Query 117402 ACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 |||| | ||||| ||| | ||||||| ||| Sbjct 975 ACCCATTCGACTTCATGGAGAACATCTCCCTGG 943 >seq977 Length=6114 Score = 132 bits (146), Expect = 5e-26 Identities = 139/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| ||||||||| | || ||||| || |||| | | | | |||| | ||| Sbjct 4332 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACGTT-AAGAG 4390 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || |||| ||||| ||||| || ||| ||||||||||||| || |||| ||| ||||| Sbjct 4391 CAAGATTCAAGACAAGGAGGGAATTCCCCCGGACCAGCAACGTCTGATCTTCGCCGGCAA 4450 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || || || |||| ||||||||| |||||||||||||||||||||| |||| || || Sbjct 4451 GCAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCA 4510 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| || || || |||| || ||| | || Sbjct 4764 ATGCAGATTTTTGTCAAGACTCTTACGGGCAAGACGATTACGCTCGAGGTGGAATCATCC 4823 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | ||| || |||| ||||| ||||| || || |||||||| Sbjct 4824 GATACTATCGACAATGTTAAGAGCAAGATTCAAGACAAGGAGGGTATTCCTCCGGACCAG 4883 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| ||||| ||| |||| || | |||||| | ||||||||| Sbjct 4884 CAGCGCCTGATTTTCGCAGGCAAGCAGTTGGAGGATGGCCGCACCTTGTCGGACTACAAC 4943 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 || ||||||||| |||| |||||| Sbjct 4944 ATTCAGAAGGAGTCCACTCTGCAT 4967 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || || || || | || ||||| | | Sbjct 4992 ATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACAATTACGTTGGAGGTCGAGTCGTCG 5051 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || || | || || ||||||||||| ||||||| Sbjct 5052 GATACCATCGATAACG-TCAAGTCTAAGATCCAAGATAAGGAGGGCATCCCACCGGACCA 5110 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | |||||||| ||||| || || | || || || || ||||| Sbjct 5111 GCAGCGCCTAATTTTTGCGGGCAAGCAGCTAGAGGATGGCCGTACTCTGTCTGATTACAA 5170 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||||||| |||| | ||||| || Sbjct 5171 CATTCAGAAGGAGTCCACTTTACATCTTGT 5200 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || || || || |||| || || | | Sbjct 5220 ATGCAGATTTTCGTCAAGACCCTGACGGGAAAGACTATTACTCTCGAGGTTGAGTCTTCG 5279 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| || || ||||| ||||| ||||||| Sbjct 5280 GACACCATTGACAACG-TCAAGTCCAAGATTCAGGATAAGGAGGGTATCCCACCGGACCA 5338 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| || || || || || || || | | || || | ||||||||| Sbjct 5339 GCAGCGCCTGATCTTTGCTGGTAAGCAACTCGAGGATGGAAGGACGCTGAGCGACTACAA 5398 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| ||| || || Sbjct 5399 CATCCAGAAGGAGAGCACCCTTCA 5422 >seq4873 Length=13461 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || |||||||| || |||||| | || || || | || Sbjct 6385 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCATCC 6326 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | ||||| || || | ||||| ||||| || ||| |||||||| Sbjct 6325 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 6266 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| ||||| ||||| || || | |||||||| ||||||||| Sbjct 6265 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGACTACAAC 6206 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| |||| || || Sbjct 6205 ATCCAGAAGGAGTCCACTCTTCA 6183 >seq4907 Length=24529 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || | |||||||| ||||||||| | || ||||| || |||| | | Sbjct 4311 TTCGTCAAGACCTTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACTATC 4370 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||| || || |||||||||| || || Sbjct 4371 GACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGAATTCCTCCGGACCAGCAGCGCCTG 4430 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || || | |||||||| ||||||||||||||||||| Sbjct 4431 ATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTTTCCGACTACAACATCCAGAAG 4490 Query 40879 G 40879 | Sbjct 4491 G 4491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515174891148800