Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudogymnoascus_20sp._20VKM_20F-
3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq977 129 7e-25
seq4873 98.7 1e-15
>seq977
Length=6114
Score = 129 bits (142), Expect = 7e-25
Identities = 148/194 (76%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| ||||| |||||||| | ||||| || |||| || |||||||||||||||||
Sbjct 4727 CTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAA 4668
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
|| || ||||||||||| | || | || |||||||||| ||| | || | |||| ||
Sbjct 4667 AATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGA-CG 4610
Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169
| | | | |||||| ||| || || || | |||||||| ||||| || || |||||
Sbjct 4609 TTGTCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTA 4550
Query 43170 ACAAAGATTTGCAT 43183
|| ||||| |||||
Sbjct 4549 ACGAAGATCTGCAT 4536
Score = 105 bits (116), Expect = 8e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
|||||||||| ||| |||||| ||||| ||||| || | || || || | || ||
Sbjct 4972 ACCAAATGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGACAAGGTGCGGCCATCCTCC 4913
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
| |||||| || ||||| || || ||||||||||| | || | | |||||||| | ||
Sbjct 4912 AACTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGT-CTTG 4854
Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153
| | || | | | | | | | | || ||| |||||||| |||| ||| || || ||
Sbjct 4853 AATCTTGCTCTTAACATTGTCGATAGTATCGGATGATTCCACCTCGAGCGTAATCGTCTT 4794
Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|||||| || ||||| ||||| || |||||
Sbjct 4793 GCCCGTAAGAGTCTTGACAAAAATCTGCAT 4764
Score = 102 bits (112), Expect = 9e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 42980 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 43039
||| || ||| |||||| ||||| |||||||||| |||||| || | || ||||||||
Sbjct 5195 ATGTAAAGTGGACTCCTTCTGAATGTTGTAATCAGACAGAGTACGGCCATCCTCTAGCTG 5136
Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099
||| || || || || || ||||||||||| | || | || |||||| || ||| ||
Sbjct 5135 CTTGCCCGCAAAAATTAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGGATCTT 5076
Query 43100 TTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159
|||| | | | || || ||| || || || | ||| || || || || ||
Sbjct 5075 AGACTTGACGTTATCGATGGTATCCGACGACTCGACCTCCAACGTAATTGTCTTTCCGGT 5016
Query 43160 TAGCGTCTTTACAAAGATTTGCAT 43183
|| ||||| || |||||||||||
Sbjct 5015 GAGAGTCTTGACGAAGATTTGCAT 4992
Score = 98.7 bits (108), Expect = 1e-15
Identities = 167/237 (70%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 42949 CCTATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 43008
||||||| || || | | ||| | |||||| || | ||||||||||| || || ||||
Sbjct 5454 CCTATTGGCCACCACGAAGACGGAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGT 5395
Query 43009 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 43068
| || ||| |||| | || || || ||||||||||| || || || ||||||||||
Sbjct 5394 AGTCGCTCAGCGTCCTTCCATCCTCGAGTTGCTTACCAGCAAAGATCAGGCGCTGCTGGT 5335
Query 43069 CGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCT 43126
| | || | | |||||| ||| ||| | || | |||| ||| | | | |||||
Sbjct 5334 CCGGTGGGATACCCTCCTTATCC-TGAATCTTGGACTTGA-CGTTGTCAATGGTGTCCGA 5277
Query 43127 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || |||| || || || || ||||| || ||||| || || || |||||
Sbjct 5276 AGACTCAACCTCGAGAGTAATAGTCTTTCCCGTCAGGGTCTTGACGAAAATCTGCAT 5220
>seq4873
Length=13461
Score = 98.7 bits (108), Expect = 1e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034
||||| || | ||| |||||| || || ||||| || | || || || | || ||
Sbjct 6177 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCG 6236
Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094
|||||||| || ||||| || | ||||||||||| | || | | |||||||||| |
Sbjct 6237 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGG 6296
Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154
|| || |||| | | | |||||| || ||||| || | ||||| || |||
Sbjct 6297 ATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTG 6356
Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||| || ||||| || |||||||||||
Sbjct 6357 CCCGTCAGGGTCTTCACGAAGATTTGCAT 6385
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571768423686400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |