Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq977 127 1e-24 seq4873 104 2e-17 seq4907 82.4 5e-11 >seq977 Length=6114 Score = 127 bits (140), Expect = 1e-24 Identities = 145/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 || ||||| ||||||||||| |||| | || ||| | || |||||||||||||||||||| Sbjct 4954 TCCTTCTGAATGTTGTAGTCCGACAAGGTG-CGGCCATCCTCCAACTGCTTGCCTGCGAA 4896 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||| || ||||||||||| || | | ||||||||| ||||| ||| | || Sbjct 4895 AATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGAATCTTGCTCTTAACATT 4836 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | ||||| ||||| || || | ||| || || ||||| || ||||| || || Sbjct 4835 GTCGATAGTATCGGATGATTCCACCTCGAGCGTAATCGTCTTGCCCGTAAGAGTCTTGAC 4776 Query 34378 AAAGATCTGCAT 34389 ||| |||||||| Sbjct 4775 AAAAATCTGCAT 4764 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| || ||||| |||||||| ||||| || ||| |||| Sbjct 4747 AGGACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCC 4688 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || |||||||| || ||||||||||| || | || ||||||||| Sbjct 4687 TCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 4628 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| ||| || || |||| |||||||| Sbjct 4627 TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGTC 4568 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || || || ||||||||||| Sbjct 4567 TTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 4536 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || || |||||||| || ||||| |||||||| || ||| Sbjct 5218 CCACCGCGGAGACGGAGAACAAGATGTAAAGTGGACTCCTTCTGAATGTTGTAATCAGAC 5159 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || || | ||||||||| || ||||| || ||||||||||| || Sbjct 5158 AGAGTACGGCCATCCTCTAGCTGCTTGCCCGCAAAAATTAGGCGCTGCTGGTCCGGTGGG 5099 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||| || ||||| ||| | | | || | ||| | ||| ||||| Sbjct 5098 ATGCCCTCCTTATCTTGGATCTTAGACTTGACGTTATCGATGGTATCCGACGACTCGACC 5039 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||| || || || ||||||||||| || || ||||| ||||| Sbjct 5038 TCCAACGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 4992 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | ||| || ||||| |||||||||||||| Sbjct 4534 CCACCACGCAGACGGAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 4475 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||||| ||||| || || || |||||||| ||| Sbjct 4474 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGA 4415 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | ||||| || ||||| Sbjct 4414 ATTCCCTCCTTGTCTTGAATCTTGCTCTTAACGTTGTCGATGGTATCGGAGGACTCGACC 4355 Query 34343 TCCACCGTGATGGTTTTGCCGGT 34365 || | |||||||| ||||| || Sbjct 4354 TCAAGGGTGATGGTCTTGCCAGT 4332 >seq4873 Length=13461 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || ||||| |||| ||| | ||| || ||||| ||||||||||| || Sbjct 6159 CCTCCACGGAGTCTCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAA 6218 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| || | ||||||||||| ||| Sbjct 6219 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 6278 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | || | | || | |||| || || || Sbjct 6279 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCCACC 6338 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||| || ||||| || || || ||||| ||||| ||||| Sbjct 6339 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 6385 >seq4907 Length=24529 Score = 82.4 bits (90), Expect = 5e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| |||||||||||||| || || | || || | ||||||||| || || || Sbjct 4489 TTCTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATC 4430 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT 34321 || ||||||||||| || | | ||||||||| ||||| ||| | || | | Sbjct 4429 AGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCG 4370 Query 34322 ATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAG 34381 || | ||||| || ||||| || | |||||||| ||||| || | || || || ||| Sbjct 4369 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGAAG 4310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323044910412800