Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq3646 98.7 2e-15 seq499 89.7 1e-12 >seq3646 Length=8928 Score = 98.7 bits (108), Expect = 2e-15 Identities = 157/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 101851 CATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGAT---TTGGC 101907 |||||||||||||| | |||||| | | ||||| ||| ||| | | || || Sbjct 1403 CATCAAGAAGAAGGCCGATTGGGCTGTCAGGTGGATCCAAGACAAGGATTCTACCTTCGC 1344 Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 | | | |||||||| ||||| ||||| || || ||||| ||| | |||||||| Sbjct 1343 CCAGCGTCTCGTTGCCTTCGCTGCCGTTGAGGGTATTTTCTTCTCTGGCTCCTTCGCATC 1284 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 |||||||||| | ||||| | || | || |||| || |||| ||| || ||| |||| Sbjct 1283 CATTTTCTGGCTTAAGAAGCGTGGCCTCATGGCTGGCCTTACCTTCTCTAACGAGCTCAT 1224 Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTT 102072 ||| | ||||| ||||| || ||||| || ||| | || || Sbjct 1223 TTCCCGCGACGAGGGTCTCCACACTGACTTCGCCTGCCTCCTCTT 1179 >seq499 Length=3129 Score = 89.7 bits (98), Expect = 1e-12 Identities = 175/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| ||||| || ||||| ||||| || || ||| || || ||||| |||||| Sbjct 727 CCGATACCTCCGGCGGTCTTTGAGATCATGGCACAGGTCTTGAGTGTGTCATAGATACCC 786 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGG-TGTGACTGT 94904 ||||| || || || | | | | | | |||||| || || || || | |||| ||| Sbjct 787 TCAATACTGTCCTCCTTCATGTCGACCAAGAAGCAGGACGACAGCTGAGCCTGTGG-TGT 845 Query 94905 TCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 || ||| || ||||| |||||||| || || || || | |||||||| | || Sbjct 846 ACCGGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTATTTGGAAGACATGAGGTTGTA 905 Query 94965 TGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 ||| || || | || || ||||||||||| || || |||||||||||||| Sbjct 906 TGTCTCGATTGTCTTCTCAATATCCTCGCCGTGAATGCCCACCGCAACACGCATAATCAT 965 Query 95025 GTCCTGAGGGCGCTCA 95040 || ||| || | |||| Sbjct 966 GTGCTGCGGCCTCTCA 981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989496768170400