Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq499 154 2e-32 seq3646 134 2e-26 >seq499 Length=3129 Score = 154 bits (170), Expect = 2e-32 Identities = 562/870 (65%), Gaps = 16/870 (2%) Strand=Plus/Plus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002 |||| ||||||| ||||||||||| ||||||| || | | | || | | ||||| Sbjct 124 GCAAGGGATGCCAAGTTACACACGGCAACCTCATCAGGAGCAGAGTACTCGACAATCTCT 183 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 |||||||| || | || || || | || | || || ||||| ||| || Sbjct 184 GTGCAAAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAA 243 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 |||||||| || || ||||| || | || || ||| | |||| || | ||| | | | Sbjct 244 GCATCCTTGTACAGCATGAAAGGGTTTCCTGTCTCAGTTTGAGCCTCGAGAATGGAGTAC 303 Query 63123 CAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTT---TCTCTTTCGTA--TAGA 63176 || | | || | ||||| || | ||| | | || || || ||||| | Sbjct 304 CAAA-GCTTCTGGGCCTTGATGGTC---TTGCGACCCTTTCCATCCCTCTCGTAGCTCTC 359 Query 63177 GTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGG 63235 ||| || || || ||||| || || |||| | |||| | ||| || || | || Sbjct 360 GTA---AAGCGCCTCAAACTCATCGCCGTAAACGTCAGCCAACCCAGGGCACTCGTTGGG 416 Query 63236 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63295 ||||| | | ||| || |||| | || || || ||||| |||||||| || ||||| Sbjct 417 GCACATGAGGGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGAGATCCGGGATCCA 476 Query 63296 AAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGAT 63354 ||||| || || || || | | | |||||| || || |||||| | | | Sbjct 477 GAGAGCGTAGAACAAG-TCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTTCTCAAGT 535 Query 63355 CGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCC 63414 | |||||| | | | ||| | ||||| || || | ||| ||||| | | | ||||| | Sbjct 536 CTAGGAACTCAAAGACATCCGCGTGCCATGGCTCGACGTAGATGGCGAAAGCACCAGGGC 595 Query 63415 GTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAA 63474 | ||||| || || || || | |||||| || ||||| || | || | | ||| |||| Sbjct 596 GCTTGTTGCCACCTTGGTCAACGTATCTTGCAGTGTTGTTGAAGACGCGGAGCATGGGAA 655 Query 63475 TAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTAC 63534 ||||| || || | || |||||||| | ||| || | ||| ||||||| ||| | Sbjct 656 CGATACCATTCGAGTTTCCGTTGGTACCAGCGATGTATGCACCAGTGGCACGGATACGAT 715 Query 63535 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGT 63594 || | || || || || || | || ||||| | || || || | |||| Sbjct 716 GGATGTTCAATCCGATACCTCCGGCGGTCTTTGAGATCATGGCACAGGTCTTGAGTGTGT 775 Query 63595 CATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 63654 ||||||| || || || || || || |||||| | | || ||| |||| || Sbjct 776 CATAGATACCCTCAATACTGTCCTCCTTCATGTCGACCAAGAAGCAGGACGACAGCTGAG 835 Query 63655 GACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 63714 | | || || ||||| || | || || |||||||| || || |||| ||| | Sbjct 836 CCTGTGGTGTACCGGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTATTTGGAAGACA 895 Query 63715 GTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACAC 63774 || ||||| ||||| || | || |||||| ||||| || || || |||| Sbjct 896 TGAGGTTGTATGTCTCGATTGTCTTCTCAATATCCTCGCCGTGAATGCCCACCGCAACAC 955 Query 63775 GCATTAACATGTGCTGAGGTCTTTCAACAA 63804 |||| | ||||||||| || || ||| ||| Sbjct 956 GCATAATCATGTGCTGCGGCCTCTCAGCAA 985 >seq3646 Length=8928 Score = 134 bits (148), Expect = 2e-26 Identities = 179/248 (72%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || ||||| || ||| ||||||||||| | ||| | |||||||| || || || Sbjct 1188 CAGGCGAAGTCAGTGTGGAGACCCTCGTCGCGGGAAATGAGCTCGTTAGAGAAGGTAAGG 1247 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || | ||| ||||||||||| |||||||| || ||||| ||||| || || || ||||| Sbjct 1248 CCAGCCATGAGGCCACGCTTCTTAAGCCAGAAAATGGATGCGAAGGAGCCAGAGAAGAAA 1307 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33758 || || || || ||||| ||||||| || | || | | | | |||| || Sbjct 1308 ATACCCTCAACGGCAGCGAAGGCAACGAGACGCTGGGCGAAGGTAGAATCCTTGTCTTGG 1367 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||||| | |||||||||||||||||| || | ||||| || || || |||||||| Sbjct 1368 ATCCACCTGACAGCCCAATCGGCCTTCTTCTTGATGCAAGGAATGGTCTCGATGGCATTG 1427 Query 33819 AAGAGATA 33826 ||||| || Sbjct 1428 AAGAGGTA 1435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629763435686400