Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3646 116 5e-21 >seq3646 Length=8928 Score = 116 bits (128), Expect = 5e-21 Identities = 175/248 (71%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || ||||| || ||| |||||||| || | ||| | ||||| || || || || Sbjct 1188 CAGGCGAAGTCAGTGTGGAGACCCTCGTCGCGGGAAATGAGCTCGTTAGAGAAGGTAAGG 1247 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAG 42184 || | ||| ||||||||||| |||||||| || || || || || || ||||| ||||| Sbjct 1248 CCAGCCATGAGGCCACGCTTCTTAAGCCAGAAAATGGATGCGAAGGAGCCAGAGAAGAAA 1307 Query 42185 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGT 42241 || || || || || || ||||||| || | || | | | | |||| || Sbjct 1308 ATACCCTCAACGGCAGCGAAGGCAACGAGACGCTGGGCGAAGGTAGAATCCTTGTCTTGG 1367 Query 42242 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 42301 |||||| | |||||||||||||||||| || | ||||| || || || |||||||| Sbjct 1368 ATCCACCTGACAGCCCAATCGGCCTTCTTCTTGATGCAAGGAATGGTCTCGATGGCATTG 1427 Query 42302 AAGAGATA 42309 ||||| || Sbjct 1428 AAGAGGTA 1435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671081482028800