Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3646 183 4e-41 seq499 145 1e-29 >seq3646 Length=8928 Score = 183 bits (202), Expect = 4e-41 Identities = 377/558 (68%), Gaps = 6/558 (1%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| ||||||| || ||||| | || ||| | ||||| Sbjct 1744 ATCTGGCAGATGTACAAGAAGGCGGAGGCCTCTTTCTGGACAGCAGAGGAGATTGATCTC 1685 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 ||||||||||| |||| ||| | | || | | || |||||| | || || || Sbjct 1684 TCCAAGGACCTCCACGACTGGAACAACCGCCTCAACGACGATGAGCGCTACTTCATCTCC 1625 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| || | || ||||| |||| || || ||||| |||||||| || || | || Sbjct 1624 CACGTTCTCGCTTTCTTCGCCGCGTCGGACGGAATTGTCAACGAGAACCTCCTCGAGCGC 1565 Query 125199 TTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATT 125258 ||| ||| | || ||||| | ||||| ||||| |||||||| ||||| Sbjct 1564 TTCAGCAGCGAGGTCCAAATCCCAGAAGCCCGCTGCTTCTACGGTTTCCAAATTATGATC 1505 Query 125259 GAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAA 125318 |||||| | ||| | || | ||||| || ||||||| ||||| | | |||| Sbjct 1504 GAGAACATTCACGCCGAGACATACTCCCTCCTCATTGACACATACAT---CAAGGAGCAA 1448 Query 125319 CGTAAA--CACAT-GCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCT 125375 | || ||||| ||||| || || ||||| || | || | || || ||||| Sbjct 1447 GCTCAACGCACATACCTCTTCAATGCCATCGAGACCATTCCTTGCATCAAGAAGAAGGCC 1388 Query 125376 CAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCA 125435 | |||| | |||||||| | ||| | | ||| | | |||| | | || || || Sbjct 1387 GATTGGGCTGTCAGGTGGATCCAAGACAAGGATTCTACCTTCGCCCAGCGTCTCGTTGCC 1328 Query 125436 TTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAG 125495 ||||| ||||| ||||| || ||||| || || || || |||| || ||||| ||| Sbjct 1327 TTCGCTGCCGTTGAGGGTATTTTCTTCTCTGGCTCCTTCGCATCCATTTTCTGGCTTAAG 1268 Query 125496 AAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGC 125555 ||||| || |||||| | || || || | ||||||| | || || || |||||||| Sbjct 1267 AAGCGTGGCCTCATGGCTGGCCTTACCTTCTCTAACGAGCTCATTTCCCGCGACGAGGGT 1208 Query 125556 CTACACTGTGACTTTGCC 125573 || ||| |||||| ||| Sbjct 1207 CTCCACACTGACTTCGCC 1190 >seq499 Length=3129 Score = 145 bits (160), Expect = 1e-29 Identities = 358/534 (67%), Gaps = 12/534 (2%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 || ||||| ||| | | ||| | || || |||||| | | | ||| || || || | Sbjct 680 ACCAACGGAAACTCGAATGGTATCGTTCCCATGCTCCGCGTCTTCAACAACACTG-CAAG 622 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||||| || || ||||| || || || || ||| | ||| ||||| | || || || Sbjct 621 ATACGTTGACCAAGGTGGCAACAAGCGCCCTGGTGCTTTCGCCATCTACGTCGAGCCATG 562 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 ||||||||| || ||||| || | || || | || ||| ||| || || | || Sbjct 561 GCACGCGGATGTCTTTGAGTTCCTAGACTTGAGAAAGAACCACGGCAAGGAGGAAGTCCG 502 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTC---AA 97042 ||| | |||||||| || || |||||| | || ||| | ||||||||||| || || Sbjct 501 TGCCCGTGACTTGTTCTACGCTCTCTGGATCCCGGATCTCTTCATGAAGCGTGTTGAGAA 442 Query 97043 CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 |||||| |||||| ||| ||||||||| || || || || || | || | Sbjct 441 GAACGGTG---ACTGGACCCTCATGTGCCCCAACGAGTGCCCTGGGTTGGCTGACGTTTA 385 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGA-GGGCCGATACGTGAGAC 97161 ||||| ||||||||||| ||| | ||||||| || || | || |||| Sbjct 384 CGGCGATGAGTTTGAGGCGCTTTACGAGAGCTACGAGAGGGATGGAAAGGGTCGCAAGAC 325 Query 97162 GAGTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | || | || | |||| || ||| | |||| | |||||| ||||| |||| Sbjct 324 CA-TCAAGGC-CCAGAAGCTTTGGTACTCCATTCTCGAGGCTCAAACTGAGACAGGAAAC 267 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | ||| || ||||||||| | || ||||| |||||||| || | || ||| Sbjct 266 CCTTTCATGCTGTACAAGGATGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACC 207 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 || ||||||| || ||||| || ||||| |||||| | |||| || ||| Sbjct 206 ATTCGCAGCTCCAACCTTTGCACAGAGATTGTCGAGTACTCTGCTCCTGATGAG 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740995468908800