Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4858 116 6e-22 >seq4858 Length=6981 Score = 116 bits (128), Expect = 6e-22 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| ||||||| |||| ||| |||||| ||||||| || || |||| ||| | Sbjct 1285 TGATCTACGAAGAGACCCGTGGTGTCCTGAAGACCTTCCTCGAGGGAGTCATCCGTGACG 1226 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||||||||||||| | ||| ||||||| | Sbjct 1225 CCGTCACCTACACCGAGCACGCCAAGCGCAAGACTGTCACCTCCCTCGATGTCGTCTACG 1166 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || ||||||||||| | | || ||||| || ||||| Sbjct 1165 CCCTCAAGCGTCAAGGCCGCACCCTGTACGGTTTCGGTGGTTAA 1122 Score = 95.1 bits (104), Expect = 2e-15 Identities = 83/101 (82%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||| |||||| || |||||||| || ||||||||||| || || Sbjct 1442 GCCAAGCGCCACCGCAAGAT-TCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCCAT 1384 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| || |||||||| || ||||||||| | |||| Sbjct 1383 CCGCCGTCTCGCACGTCGTGGAGGTGTCAAGCGTATTTCTG 1343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068909567840