Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq499 163 4e-35 seq3646 140 4e-28 >seq499 Length=3129 Score = 163 bits (180), Expect = 4e-35 Identities = 743/1159 (64%), Gaps = 32/1159 (3%) Strand=Plus/Plus Query 62888 CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62947 || ||||| ||||||| ||||| ||||| ||||||| || | | | || | | || Sbjct 120 CAGGGCAAGGGATGCCAAGTTACACACGGCAACCTCATCAGGAGCAGAGTACTCGACAAT 179 Query 62948 CTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 63007 ||| |||||||| || | || || || | || | || || ||||| ||| Sbjct 180 CTCTGTGCAAAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTT 239 Query 63008 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 63067 || |||||||| || || ||||| || | || || ||| | |||| || | ||| | Sbjct 240 GCAAGCATCCTTGTACAGCATGAAAGGGTTTCCTGTCTCAGTTTGAGCCTCGAGAATGGA 299 Query 63068 TTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCCTT---TCTCTTTCGTA-- 63121 | ||| | | || | ||||| || | ||| | | || || || ||||| Sbjct 300 GTACCAAA-GCTTCTGGGCCTTGATGGTC---TTGCGACCCTTTCCATCCCTCTCGTAGC 355 Query 63122 TAGTGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCAT 63180 | ||| || || || ||||| || || |||| | |||| ||||| || || | Sbjct 356 TCTCGTA---AAGCGCCTCAAACTCATCGCCGTAAACGTCAGCCAACCCAGGGCACTCGT 412 Query 63181 CCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAA 63240 || ||||| | | ||| || |||| | || || || ||||| |||||||| || | Sbjct 413 TGGGGCACATGAGGGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGAGATCCGGGA 472 Query 63241 TCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 63299 |||| ||||| || || || || | || | |||||| || || |||||| | Sbjct 473 TCCAGAGAGCGTAGAACAAG-TCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTTCTC 531 Query 63300 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 63359 | || |||||| | | | ||| | ||||| || || | ||| ||||| | | | ||| Sbjct 532 AAGTCTAGGAACTCAAAGACATCCGCGTGCCATGGCTCGACGTAGATGGCGAAAGCACCA 591 Query 63360 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63419 || || ||||| || || || || | |||||| || ||||| || | || | | ||| Sbjct 592 GGGCGCTTGTTGCCACCTTGGTCAACGTATCTTGCAGTGTTGTTGAAGACGCGGAGCATG 651 Query 63420 GGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATA 63479 |||| ||||| || || | || |||||||| | ||| || ||| ||||||| ||| Sbjct 652 GGAACGATACCATTCGAGTTTCCGTTGGTACCAGCGATGTATGCACCAGTGGCACGGATA 711 Query 63480 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63539 | || | || || || || || | || ||||| | || || || | Sbjct 712 CGATGGATGTTCAATCCGATACCTCCGGCGGTCTTTGAGATCATGGCACAGGTCTTGAGT 771 Query 63540 GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63599 ||||||||||||||||| || || || || |||||| | | || ||| |||| Sbjct 772 GTGTCATAGATACCCTCAATACTGTCCTCCTTCATGTCGACCAAGAAGCAGGACGACA-- 829 Query 63600 TGGTGACGACT----AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 63655 | ||| | || || || ||||| || | || || |||||||| || || |||| Sbjct 830 -GCTGA-GCCTGTGGTGTACCGGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTATTT 887 Query 63656 TTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTAC 63715 ||| | || ||||| ||||| || | || |||||| ||||| || || Sbjct 888 GGAAGACATGAGGTTGTATGTCTCGATTGTCTTCTCAATATCCTCGCCGTGAATGCCCAC 947 Query 63716 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 63775 || |||||||| | ||||||||| || || ||| | | ||| | | | | || Sbjct 948 CGCAACACGCATAATCATGTGCTGCGGCCTCTCAGCAACCTT-TCCATCAAGACGGAGAA 1006 Query 63776 G-TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTA 63832 | || ||| | |||| || || || ||||| || | ||| ||||| || || ||||| Sbjct 1007 GATACGATCTCTCCAGTGTCTTGAAGCCAAAGTATTGGTAGTTGAAA--TCACGGTCGTA 1064 Query 63833 AATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGA 63892 || | | |||||||| | || | || |||| | || || | ||| Sbjct 1065 AAGGACGGCAGAGTTGAGCTCGTCTGCGTGCTTCATAACGGTGTCATATGTCTTCTTTGC 1124 Query 63893 AATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCAC 63952 ||| || || || | ||| || || || || || |||| | | | || | || || Sbjct 1125 AATCATGGGCGACGGCTTCGAGTTCTTGGGGTTTACGTAGTGGTACAGGTCGTAGATGAC 1184 Query 63953 TTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTA 64011 | || | ||| | || || || | |||||| || || || ||||| || | || || | Sbjct 1185 -TGACGAGAATTGCTTCTTCGTCTGCTTGTGAAGGTTCGACACGGCAATACGTGCAGCCA 1243 Query 64012 GAATGGCATAATCCGGATG 64030 | |||||||| || || || Sbjct 1244 GGATGGCATAGTCTGGGTG 1262 >seq3646 Length=8928 Score = 140 bits (154), Expect = 4e-28 Identities = 180/248 (73%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || ||||| || ||| ||||||||||| | ||| || ||||| || || || || Sbjct 1188 CAGGCGAAGTCAGTGTGGAGACCCTCGTCGCGGGAAATGAGCTCGTTAGAGAAGGTAAGG 1247 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || | ||| ||||||||||| |||||||| || ||||| ||||| || ||||| ||||| Sbjct 1248 CCAGCCATGAGGCCACGCTTCTTAAGCCAGAAAATGGATGCGAAGGAGCCAGAGAAGAAA 1307 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33480 || || || || ||||| ||||||| || | || | | | | |||| || Sbjct 1308 ATACCCTCAACGGCAGCGAAGGCAACGAGACGCTGGGCGAAGGTAGAATCCTTGTCTTGG 1367 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 |||||| | |||||||||||||||||| || | ||||| || || || |||||||| Sbjct 1368 ATCCACCTGACAGCCCAATCGGCCTTCTTCTTGATGCAAGGAATGGTCTCGATGGCATTG 1427 Query 33541 AAGAGATA 33548 ||||| || Sbjct 1428 AAGAGGTA 1435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622893626540800