Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq977 145 6e-30 seq4873 114 1e-20 seq4907 107 2e-18 >seq977 Length=6114 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||| | || || || ||| | || || || |||||| | || Sbjct 4764 ATGCAGATTTTTGTCAAGACTCTTACGGGCAAGACGATTACGCTCGAGGTGGAATCATCC 4823 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | || || ||||||||||||||||||||||| || || || Sbjct 4824 GATACTATCGACAATGTTAAGAGCAAGATTCAAGACAAGGAGGGTATTCCTCCGGACCAG 4883 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||||| |||||| ||||||| | || || |||||| Sbjct 4884 CAGCGCCTGATTTTCGCAGGCAAGCAGTTGGAGGATGGCCGCACCTTGTCGGACTACAAC 4943 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || ||||| | ||||| ||| | || | || || ||| Sbjct 4944 ATTCAGAAGGAGTCCACTCTGCATTTGGTTCTCCGTCTTCGTGGTGGT 4991 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || || |||||||| | ||| | | || Sbjct 4332 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACGTTAAGAGC 4391 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||||||||||||||| ||||| || || || |||||||| || || |||||||| Sbjct 4392 AAGATTCAAGACAAGGAGGGAATTCCCCCGGACCAGCAACGTCTGATCTTCGCCGGCAAG 4451 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | ||||| ||||||| ||||||| |||||||| || || || ||||| | || Sbjct 4452 CAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCAC 4511 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || | || |||| || ||| Sbjct 4512 TTGGTCCTCCGTCTGCGTGGTGGT 4535 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | ||||| || || | || | || || || | | Sbjct 4992 ATGCAAATCTTCGTCAAGACTCTCACCGGAAAGACAATTACGTTGGAGGTCGAGTCGTCG 5051 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | |||| || || ||||| |||||||| || ||||| || || Sbjct 5052 GATACCATCGATAACGTCAAGTCTAAGATCCAAGATAAGGAGGGCATCCCACCGGACCAG 5111 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| |||||||| ||| || | || ||||||||| Sbjct 5112 CAGCGCCTAATTTTTGCGGGCAAGCAGCTAGAGGATGGCCGTACTCTGTCTGATTACAAC 5171 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || ||||| ||||| | ||| | || | ||||| ||| Sbjct 5172 ATTCAGAAGGAGTCCACTTTACATCTTGTTCTCCGTCTCCGCGGTGGT 5219 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| || | || || || || ||||| | || || || | || Sbjct 4536 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGTCGTCC 4595 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||| ||||| || || || Sbjct 4596 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAG 4655 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||| | ||||| |||||| |||||||||||||| Sbjct 4656 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACTCTCTCCGATTACAAC 4715 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 4716 ATTCAGAAGGAGTCGAC 4732 >seq4873 Length=13461 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || || |||| ||||| ||||| | || Sbjct 6385 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCATCC 6326 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || || ||||||||||| ||||| || || || Sbjct 6325 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 6266 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| ||| | |||||| ||||||| | || || |||||| Sbjct 6265 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGACTACAAC 6206 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || ||||| | || || || || || | || |||||| Sbjct 6205 ATCCAGAAGGAGTCCACTCTTCACTTGGTCCTGAGACTCCGTGGAGGT 6158 >seq4907 Length=24529 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 || || || || || || || || || |||| ||||| || || || ||||||| | Sbjct 4311 TTCGTCAAGACCTTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACTATC 4370 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| || |||| || || |||||||||||||| ||||| || || || || || || Sbjct 4371 GACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGAATTCCTCCGGACCAGCAGCGCCTG 4430 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || ||||| ||||| ||| | |||||| |||||| | ||||| |||||||| || || Sbjct 4431 ATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTTTCCGACTACAACATCCAGAA 4489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419692805807200