Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudogymnoascus_20sp._20VKM_20F-
3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq977 185 2e-41
seq4907 120 6e-22
seq2066 87.8 3e-12
>seq977
Length=6114
Score = 185 bits (204), Expect = 2e-41
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||||||| || || ||||| || || ||||| |||||||||
Sbjct 4762 CCACCACGAAGACGAAGGACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGAG 4703
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| || || | || ||||| || |||
Sbjct 4702 AGAGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGA 4643
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | ||||||| ||||||||||| | || || ||
Sbjct 4642 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCAACC 4583
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| |||||||| || || ||||||||||| ||||| ||||||||
Sbjct 4582 TCCAAAGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 4536
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | || | |||| |||||||| || || ||||| ||||| ||
Sbjct 5218 CCACCGCGGAGACGGAGAACAAGATGTAAAGTGGACTCCTTCTGAATGTTGTAATCAGAC 5159
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| |||| |||||| || || || || || | || ||||| |||||
Sbjct 5158 AGAGTACGGCCATCCTCTAGCTGCTTGCCCGCAAAAATTAGGCGCTGCTGGTCCGGTGGG 5099
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||| ||||| ||||| | ||||||| |||||||| || | || || ||
Sbjct 5098 ATGCCCTCCTTATCTTGGATCTTAGACTTGACGTTATCGATGGTATCCGACGACTCGACC 5039
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||| || || || ||||| ||||| ||||||||||| || |||||
Sbjct 5038 TCCAACGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 4992
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | |||||||| || ||| ||| || |||||||| || |||
Sbjct 5446 CCACCACGAAGACGGAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 5387
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| ||||| ||||| || | ||||| || || || || || | || ||||| |||||
Sbjct 5386 AGCGTCCTTCCATCCTCGAGTTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGG 5327
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| || |||||||| | ||||||| || |||||||| | || || ||
Sbjct 5326 ATACCCTCCTTATCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCCGAAGACTCAACC 5267
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || || || |||||||| |||||||||||||| ||||||||
Sbjct 5266 TCGAGAGTAATAGTCTTTCCCGTCAGGGTCTTGACGAAAATCTGCAT 5220
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | ||||| || || |||||||| || || ||||| || || ||
Sbjct 4990 CCACCACGAAGACGGAGAACCAAATGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAC 4931
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | ||||| || |||||||| || ||||| || || | || ||||| || |||
Sbjct 4930 AAGGTGCGGCCATCCTCCAACTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCCGGAGGA 4871
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||||||||| ||| || ||||| || || | |||||| ||
Sbjct 4870 ATACCCTCCTTGTCTTGAATCTTGCTCTTAACATTGTCGATAGTATCGGATGATTCCACC 4811
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || || || || ||||| || |||||||| || ||||||||
Sbjct 4810 TCGAGCGTAATCGTCTTGCCCGTAAGAGTCTTGACAAAAATCTGCAT 4764
Score = 136 bits (150), Expect = 7e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || |||||||| || |||||||| || ||||||
Sbjct 4534 CCACCACGCAGACGGAGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAG 4475
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | ||||| |||||||| || || | ||| ||||| || |||
Sbjct 4474 AGGGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGA 4415
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||||||||| ||| ||| |||||||| || | || || ||
Sbjct 4414 ATTCCCTCCTTGTCTTGAATCTTGCTCTTAACGTTGTCGATGGTATCGGAGGACTCGACC 4355
Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437
|| | ||||||||| || || ||
Sbjct 4354 TCAAGGGTGATGGTCTTGCCAGT 4332
>seq4907
Length=24529
Score = 120 bits (132), Expect = 6e-22
Identities = 134/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333
|| |||||||| || ||||| || || | ||||| || | |||||| || || || ||
Sbjct 4489 TTCTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATC 4430
Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393
|| | || ||||| || ||||| || ||||||||||| ||||| | |||||| |||
Sbjct 4429 AGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCG 4370
Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452
|| || || | || || || || | ||||||||| || ||||| | ||||||||||||
Sbjct 4369 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGAA 4311
>seq2066
Length=23807
Score = 87.8 bits (96), Expect = 3e-12
Identities = 146/209 (70%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 225432 CCGAGCACACTGCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCG 225491
||| ||| ||| | |||||||| || |||||||| || ||||| | || | | | |
Sbjct 23064 CCGTGCAGACTTCATCAAGGAACCCGGAGTCGTGAGAAACAATCAGAGAAGTGATCTCGG 23123
Query 225492 TCAGGCCCTTGAGGTG--CGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGT 225549
| | |||||||| | || ||||||| |||||| || |||| ||| || ||
Sbjct 23124 TGTGAGTCTTGAGGTAATCCTG--GAGCCATTTGACGTTGGCAACATCCAAGTGATTGGT 23181
Query 225550 AGGTTCGTCCAGAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTT 225609
||||||||| ||||| || | ||||| | || | || || | | |||| |||||
Sbjct 23182 AGGTTCGTCAAGAAGGAGAACATCAGCCTTCATCAACATAGCTCTAGCAAGAGCAAGCTT 23241
Query 225610 CATTTTCCAGCCCCCGGACAGGGAGCCGA 225638
||| ||||| || || ||||| |||||||
Sbjct 23242 CATCTTCCATCCACCAGACAGCGAGCCGA 23270
Score = 86.0 bits (94), Expect = 1e-11
Identities = 125/177 (71%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 224974 GGCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTG 225033
|||||| |||||||||| |||||||||||||||| | || || || |||||| || |
Sbjct 22603 GGCATAACGCCACTGGAGGTACTGGTTGGGGGTCTTCTCGAGATGCATCTCAACGTGCTC 22662
Query 225034 GAAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCG 225093
| || ||||| | ||| | || |||| |||||| |||||| || |||
Sbjct 22663 AAGGGCGTGCTGCTTAATGTATCCAATACGCAAGTTGGGGTGCTTCTCAACTCGGCCAGT 22722
Query 225094 AGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATT 225150
||| || | ||| || || |||| ||||||||| || | ||| || ||||| ||
Sbjct 22723 AGTTGGGATGGTCTCACCAGTCAGGAGCTTGATGAGAGTGGACTTTCCGGCACCGTT 22779
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921543140473600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |