Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3646 313 5e-80 seq499 259 9e-64 seq498 111 3e-19 >seq3646 Length=8928 Score = 313 bits (346), Expect = 5e-80 Identities = 602/863 (70%), Gaps = 36/863 (4%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||||||| || ||| |||||| || ||||||||||| || Sbjct 1744 ATCTGGCAGATGTACAAGAAGGCGGAGGCCTCTTTCTGGACAGCAGAGGAGATTGATCTC 1685 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGA-ACGAAAAG---TTTTTCCTCAA 42415 |||||||| || |||| | || | || | |||| || | ||| || Sbjct 1684 TCCAAGGACCTCCACGACTGGAACA-ACCGCCTCAACGACGATGAGCGCTACTTCATCTC 1626 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 || | || || ||||||||||| || ||||| || ||||| |||||||| || | || Sbjct 1625 CCACGTTCTCGCTTTCTTCGCCGCGTCGGACGGAATTGTCAACGAGAACCT--CCTCGAG 1568 Query 42476 G--TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCC 42533 |||| | ||||| || | || || |||||||||||||| ||||| || Sbjct 1567 CGCTTCAGCAGCGAGGTCCAAATCCCAGAAGCCCGCTGCTTCTACGGTTTCCAAATTATG 1508 Query 42534 ATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGAT 42590 || |||||| | ||| | ||| ||| || || |||| |||| |||||| ||| Sbjct 1507 ATCGAGAACATTCACGCCGAGACATACTCC---CTCCTCATTGACACATACATCAAGGAG 1451 Query 42591 CCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAG 42650 | | | || | || ||||| ||||| ||||| || || ||||||||||||||| Sbjct 1450 CAAGCTCAACGCACATACCTCTTCAATGCCATCGAGACCATTCCTTGCATCAAGAAGAAG 1391 Query 42651 GCGGACTGGGCGCTCAACTGGATCGAGAGTCCCG-ACGCAACGTTCGGCGAGAGGCTGGT 42709 || || ||||| ||| |||||| | || | | | | || |||| | || | || || Sbjct 1390 GCCGATTGGGCTGTCAGGTGGATCCA-AGACAAGGATTCTACCTTCGCCCAGCGTCTCGT 1332 Query 42710 AGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCT 42769 ||||| | ||||| ||||| || |||||||| ||| ||||||| ||||| |||||||| Sbjct 1331 TGCCTTCGCTGCCGTTGAGGGTATTTTCTTCTCTGGCTCCTTCGCATCCATTTTCTGGCT 1272 Query 42770 CAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACG 42828 ||| || || || ||| | || || |||||||| ||||| ||||| | | |||| Sbjct 1271 TAAGAAGCGTGGCCTC-ATGGCTGGCCTTACCTTCTCTAACGAGCTCATTTCCCGCGACG 1213 Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||| || || | ||||| ||||||||||| ||||| ||||| | ||| |||| Sbjct 1212 AGGGTCTCCACACTGACTTCGCCTGCCTCCTCTTCTC---TCACCTTAAACAC-CGCCCA 1157 Query 42889 CG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTC 42947 | ||| || |||| | | |||| || ||||| || || ||| | |||||||| Sbjct 1156 AGCAAGCAGGCCGTCCAAGACGTCATTACCGAGGCTGTTAGCATTGAGCAAGAGTTCCTG 1097 Query 42948 ACGCAGTCGCTGCCC-GTGTCCCTGGTCGGCATGAACCACGACCTCATG-TGCAAGTACA 43005 || || | || ||| ||| | ||| ||||||||||| | || | ||| |||| |||| Sbjct 1096 ACCGAGGCACTTCCCTGTG-CGCTGCTCGGCATGAACGCCAACTTGATGAAGCAA-TACA 1039 Query 43006 TCCAGTACGTCGCCGAC---CATCTCCTGTGCCAGATGGGTCTC-AGCCGCCTCTACAAC 43061 | ||| |||||||||| | || || | | | || | || | ||||||| Sbjct 1038 TTGAGTTCGTCGCCGACAGGCTGCTTCTTTCTC---TCGGCAACGAGAAG-TTCTACAAA 983 Query 43062 ACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTC 43121 || | ||| |||||||| |||||||||||||| ||| || ||||| ||||| ||| Sbjct 982 TCGGCCAACCCATTCGACTTCATGGAGAACATCTCCCTGGCCGGTAAGACTAACTTCTTC 923 Query 43122 GAGAAGCGCGTCGCCGACTACCA 43144 ||||||||||||| ||||||||| Sbjct 922 GAGAAGCGCGTCGGCGACTACCA 900 >seq499 Length=3129 Score = 259 bits (286), Expect = 9e-64 Identities = 513/755 (68%), Gaps = 6/755 (1%) Strand=Plus/Plus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| ||| || ||||| ||||| || | | ||||| ||||||||| ||||| ||| Sbjct 133 GCCAAGTTACACACGGCAACCTCATCAGGAGCAGAGTACTCGACAATCTCTGTGCAAAGG 192 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || ||||| || |||| || || ||| |||| |||||| || |||||| Sbjct 193 TTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCATCCTTG 252 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || |||||||| || || ||||| || || |||| | | || ||| || | | Sbjct 253 TACAGCATGAAAGGGTTTCCTGTCTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTC 312 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 ||||||| ||| ||||| |||| || || |||||||| ||| || ||||| Sbjct 313 TGGGCCTTGATGGTCTTGCGACCCTTTCCATCCCTCTCGTAGCTCTCGTAAAGCGCCTCA 372 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC 244987 ||||| ||| | || || | | || |||||| ||||||||||| |||| Sbjct 373 AACTCATCGCCGTAAACGTCAGCCAACCCAGGGCACTCGTTGGGGCACATGAGGGTCCAG 432 Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047 || ||| | || || | || ||||||||| || ||||||||||| || | ||| | | Sbjct 433 TCACCGTTCTTCTCAACACGCTTCATGAAGAGATCCGGGATCCAGAGAGCGTAGAACAAG 492 Query 245048 TCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACG 245107 || | || | || ||| ||| |||||| |||| || | || |||||||| Sbjct 493 TCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTTCTCAAGTCTAGGAACTCAAAGACA 552 Query 245108 TCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGG 245167 || ||||||| ||||| | ||||| |||| || || || ||||||||||| || ||| Sbjct 553 TCCGCGTGCCATGGCTCGACGTAGATGGCGAAAGCACCAGGGCGCTTGTTGCCACCTTGG 612 Query 245168 TCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTG 245226 || || ||| | | | |||||||| ||| || | || || || || || |||| Sbjct 613 TCAACGTATCTTGCAGTG-TTGTTGAAGACGCGGAGCATGGGAACGATACCATTCGAGTT 671 Query 245227 GCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGGACATGCCT 245284 |||||||| || |||||| || || || | | | | | || |||| || || Sbjct 672 TCCGTTGGTACCAGCGATGTATGCACCAGTGGCACGGATACGATG--GATGTTCAATCCG 729 Query 245285 AGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCC 245344 | || |||||| ||| ||||| | ||| ||| |||||| ||||| || ||||| Sbjct 730 ATACCTCCGGCGGTCTTTGAGATCATGGCACAGGTCTTGAGTGTGTCATAGATACCCTCA 789 Query 245345 ATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCAC 245404 || |||||| |||||||| || || |||||||| |||||||| | || || | | Sbjct 790 ATACTGTCCTCCTTCATGTCGACCAAGAAGCAGGACGACAGCTGAGCCTGTGGTGTACCG 849 Query 245405 GAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 | ||||| || || ||| ||||| || ||||| Sbjct 850 GCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTA 884 >seq498 Length=2934 Score = 111 bits (122), Expect = 3e-19 Identities = 446/694 (64%), Gaps = 35/694 (5%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| |||| |||| || || ||| ||| |||| | ||||||||||||||||||||| Sbjct 2137 ACGGTGAATTGGATAGGGGCCGAGGCAGCCATGGTACGGAGGTAGTACATGCCGGTCTTG 2196 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || ||| |||| | | |||||||| || | ||| ||| || ||||| Sbjct 2197 AGGCCAAGCTTCCAGCCAGCAAAGTGCATGGATGTGATCTTGCCCAT--TG----TTGGG 2250 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCT 243916 || | | | || |||||| |||||| ||| || | ||||| | || || Sbjct 2251 TCCTTCATGTG------GATGTTGAGAGACTGGGACTGATCAATGAAGGCTCCACGGTCA 2304 Query 243917 GCGGCCATGGTGATGA-GGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTT 243975 || ||||| || || ||| | ||| || ||||| | | ||||| |||| || ||| Sbjct 2305 GCAGCCATCTGGACGATGGTGCG-CTGGGAGATCTCCCAGACGGTCTTATAGAGGGCCTT 2363 Query 243976 GAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGT 244035 || || | |||| |||||| || | ||||| || | |||||| || | Sbjct 2364 GATGTCGGCAGGGATGTTGGGGATGTTTTGGATGGAGCCTCCGTCGGCGATGATGCGGTT 2423 Query 244036 GCGCATGTTATCGTTCCACAGGCCCA-AGCGCTCCAGCGCCT---CGACCAGGTGCCTGT 244091 |||||| || |||||| |||| | || | || | | | |||||| | | Sbjct 2424 CTTCATGTTGTCAGACCACAGACCCATATCGACCAAGTCCTTGAGCAACCAGGGG----T 2479 Query 244092 TCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCT 244151 | || || || ||||| || | ||| || || ||| ||| | ||| | || |||| Sbjct 2480 TAACAACTTGGAACTCGCCAGCCAGGACACGACGCGAGTAAATGTTCGAGGTGTATGGCT 2539 Query 244152 CGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCA 244211 ||| || ||| || ||| || ||||| | ||| ||||| |||||||| | || | Sbjct 2540 CGAAGCACTCGTTGAAGCCGAGAATCTGGGAGGTGGAGGCAGTGGGCATGGGTGCAACGA 2599 Query 244212 GCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACA 244271 ||||| ||| | || |||||| || ||| || |||| || ||||||||||| Sbjct 2600 GCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGGGCCTTGAGAGAGTCCCAGTCCCACA 2659 Query 244272 TGCCCG-AGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTG 244330 | | | || || | | |||||||||||| | || ||| |||||| Sbjct 2660 GGTCGGTAGGGG----------TAACGCCCCACATGTCGTATTGGAGCTCGCCCTTGGAT 2709 Query 244331 ACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCT-TACAGCTCTC 244389 || || |||||||| ||| ||| | || | | ||||||||||| ||| | Sbjct 2710 ACTGGAGATCCCTCGTACGTCTCGTACGTGCCATGGATCTGGGCCAGCTCTACGGAAGCA 2769 Query 244390 GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATC 244423 ||| | || ||| ||| |||||||| |||||| Sbjct 2770 GTC-AAAGCACCGTGGTAAATGGTCTCAAAGATC 2802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944257986828800