Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq977 89.7 4e-13 >seq977 Length=6114 Score = 89.7 bits (98), Expect = 4e-13 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || |||| ||| || ||| |||||||||||||||||| || | ||| || Sbjct 4981 AGACGGAGAACCAAATGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGACAAGGTGCGG 4922 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||| |||||||| || || |||||||||||||| ||| || | | ||| Sbjct 4921 CCATCCTCCAACTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATACCCTCC 4862 Query 34030 TTGTCCATAATTTTTTGCTTA--ATGGAACTC-ACACTATCAGTAGATTCGCATTCGACC 34086 ||||| ||| || |||| || | || | | |||| | ||||| |||| | Sbjct 4861 TTGTCTTGAATCTTGCTCTTAACATTG---TCGATAGTATCGGATGATTCCACCTCGAGC 4805 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || || || || ||||| || ||||| Sbjct 4804 GTAATCGTCTTGCCCGTAAGAGTCTTGACAAAAATCTGCAT 4764 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || ||||| | ||| ||||||||||||||||||||| | || || Sbjct 5209 AGACGGAGAACAAGATGTAAAGTGGACTCCTTCTGAATGTTGTAATCAGACAGAGTACGG 5150 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||||| ||||| || ||||||||||| ||| || | || ||| Sbjct 5149 CCATCCTCTAGCTGCTTGCCCGCAAAAATTAGGCGCTGCTGGTCCGGTGGGATGCCCTCC 5090 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 || || || || ||| | | | | |||| | || ||| || | ||| Sbjct 5089 TTATCTTGGATCTTAGACTTGACGTTATCGATGGTATCCGACGACTCGACCTCCAACGTA 5030 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||||| |||||||| || || || || ||||||||||| Sbjct 5029 ATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 4992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397029106317760