Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq977 105 7e-18 seq4907 102 8e-17 seq4873 96.9 3e-15 >seq977 Length=6114 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||||| || || |||||||||||||| | || ||||| |||| ||||||||| Sbjct 4738 TGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCAAGCTGC 4679 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || |||| || ||||||||||| |||||||| || || || || || || || Sbjct 4678 TTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTG 4619 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | || || | || || || | ||| | ||||||||| || Sbjct 4618 GACTTGACGTTGTCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGTCTTGCCAGTG 4559 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| || ||||| Sbjct 4558 AGGGTCTTAACGAAGATCTGCAT 4536 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||||||||| || | | |||||| | || || | ||||||||| Sbjct 4960 GTGGACTCCTTCTGAATGTTGTAGTCCGACAAGGTGCGGCCATCCTCCAACTGCTTGCCT 4901 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| || ||||||||||| |||||||| || || || ||||| || || ||| Sbjct 4900 GCGAAAATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGAATCTTGCTCTTA 4841 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||||| | ||||| || | || | |||||||| || | ||| Sbjct 4840 ACATTGTCGATAGTATCGGATGATTCCACCTCGAGCGTAATCGTCTTGCCCGTAAGAGTC 4781 Query 64427 TTTACGAAAATTTGCAT 64443 || || ||||| ||||| Sbjct 4780 TTGACAAAAATCTGCAT 4764 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | || || ||||| | || || || || |||||||||||||| | Sbjct 5219 ACCACCGCGGAGACGGAGAACAAGATGTAAAGTGGACTCCTTCTGAATGTTGTAATCAGA 5160 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | || || ||||||||||| ||| |||| || ||||||||||| || || Sbjct 5159 CAGAGTACGGCCATCCTCTAGCTGCTTGCCCGCAAAAATTAGGCGCTGCTGGTCCGGTGG 5100 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCG--TCC 64393 || || || || ||||| || || ||| || || | |||| ||| || || Sbjct 5099 GATGCCCTCCTTATCTTGGATCTTAGACTTGACGTTATCGATGGTAT--CCGACGACTCG 5042 Query 64394 ACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || | || | ||||| ||||| | ||| || ||||| |||||||| Sbjct 5041 ACCTCCAACGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 4992 Score = 91.5 bits (100), Expect = 1e-13 Identities = 125/175 (71%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | || |||||| |||| ||||| ||||||||| Sbjct 4504 GTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTGCTTGCCG 4445 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || || |||||||| || |||||||| || || ||||| || || ||| Sbjct 4444 GCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTTGCTCTTA 4385 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCA 64421 || || | ||||| || || || || | || | ||||||||| |||| Sbjct 4384 ACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGTCA 4330 >seq4907 Length=24529 Score = 102 bits (112), Expect = 8e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || || |||||||| || | | |||||| | || || ||||||||||| ||| | || Sbjct 4489 TTCTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGATC 4430 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 || ||||||||||| ||||||||||| || || ||||| || || ||| ||| || Sbjct 4429 AGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCTTGGATCTTCGACTTGACATTGTCG 4370 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAA 64434 | ||||| || || || || | || | ||||||||| ||||| || || ||||| Sbjct 4369 ATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGAA 4311 >seq4873 Length=13461 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| || || | |||| || || || || || |||||||| || | Sbjct 6158 ACCTCCACGGAGTCTCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 6217 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || || |||||||||||||| | || | ||||||||||| || || Sbjct 6218 AAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGG 6277 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || || || ||| ||| || | || || | ||||| Sbjct 6278 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCCAC 6337 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| |||| || || ||||| |||||||| Sbjct 6338 CTCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 6385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499601830547200