Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq499 165 1e-35 seq3646 149 8e-31 seq498 123 3e-23 >seq499 Length=3129 Score = 165 bits (182), Expect = 1e-35 Identities = 543/836 (65%), Gaps = 15/836 (2%) Strand=Plus/Plus Query 116359 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACA 116418 ||||||| ||||| || |||||||| | | | || | ||| | | || ||| Sbjct 52 ACAACCTGTGTGACCTCGTGAAGCTTCTGGAAGTCGTATGTGCCGTTGGCCATATCAACA 111 Query 116419 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 116478 ||| | || ||||| | || |||| |||||||| | |||||| | ||| |||| Sbjct 112 TACGTTGGCAGGGCAAGGGATGCCAAGTTACACACGGCAACCTCATCAGGAGCAGAGTAC 171 Query 116479 TCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 116538 || | ||| || || || | || || || |||||| || | |||||| || || | Sbjct 172 TCGACAATCTCTGTGCAAAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGCTC 231 Query 116539 TTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTG 116598 || ||| || ||||||||||| ||||| | || | || ||||| ||||| | || | Sbjct 232 TTGCGGTTGCAAGCATCCTTGTACAGCATGAAAGGGTTTCCTGTCTCAGTTTGAGCCTCG 291 Query 116599 AGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGC---CCCTCCTC 116654 ||||| | | ||| | | || | | || | ||| ||| | | || ||| Sbjct 292 AGAATGGAGTACCAAAGCTTCTGGGCCTTGA----TGGTCTTGCGACCCTTTCCATCCCT 347 Query 116655 CTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGC 116714 |||||| | ||| || ||||||||||| || || | | || | | ||| || Sbjct 348 CTCGTAGCTCTCGTAAAGCGCCTCAAACTCATCGCCGTAAACGTCAGCCAACCCAGGGCA 407 Query 116715 CTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTC 116774 || | || || | ||| | ||| | ||| || |||||| |||||||||||||| || Sbjct 408 CTCGTTGGGGCACATGAGGGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGAGATC 467 Query 116775 TGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAG 116834 ||||||||||| || |||| | || || || |||| || | || || || Sbjct 468 CGGGATCCAGAGAGCGTAGAACAAGTCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTT 527 Query 116835 ACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGA 116894 | ||| || | || || | || |||||||||||| || || | ||| | |||| | Sbjct 528 TCTCAAGTCTAGGAACTCAAAGACATCCGCGTGCCATGGCTCGACGTAGATGGCGAAAGC 587 Query 116895 CCCCTTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAG 116951 || ||| ||| | |||| || || || || || ||| || ||||| || Sbjct 588 ACCAGGGCGCTTGTTGCCACCTTGGTCAACGTATCTTGCAGTGTTGTTGAAGACGCGGAG 647 Query 116952 CATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCT 117009 ||| |||| |||||||| || | || || || || ||| || | || | |||| Sbjct 648 CATGGGAACGATACCATTCGAGTTTCCGTTGGTACCAGCGATGTATG-CACCAG-TGGCA 705 Query 117010 CTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCC 117069 | || | ||||||| || || ||||| || || ||||||||| || || | Sbjct 706 CGGATACGATGGATGTTCAATCCGATACCTCCGGCGGTCTTTGAGATCATGGCACAGGTC 765 Query 117070 GTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTC 117129 |||| || | ||||| || || || ||| |||| | ||| | ||||||| | Sbjct 766 TTGAGTGTGTCATAGATACCCTCAATACTGTCCTCCTTCATGTCGACCAAGAAGCAGGAC 825 Query 117130 GACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 117185 |||| || | | ||||||||| || |||||||| ||||| | ||||| |||| Sbjct 826 GACAGCTGAGCCTGTGGTGTACCGGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAA 881 >seq3646 Length=8928 Score = 149 bits (164), Expect = 8e-31 Identities = 344/510 (67%), Gaps = 9/510 (2%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||||||||||||||| ||||| ||||| || || |||||| || || | |||||| || Sbjct 1202 GTGGAGACCCTCGTCGCGGGAAATGAGCTCGTTAGAGAAGGTAAGGCCAGCCATGAGGCC 1261 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | ||||||||| | || |||||||||||||| || ||||| || Sbjct 1262 ACGCTTCTTAAGCCAGAAAATGGATGCGAAGGAGCCAGAGAAGAAAATACCCTCAACGGC 1321 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCATCG 127709 ||||| |||| ||||||| ||| |||| | | |||| | | |||| | | | Sbjct 1322 AGCGAAGGCAACGAGACGCTGGGCGAAGG-TAGAATCCTTGTCTTGGATCCACCTGACAG 1380 Query 127710 CCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCT 127769 |||| | ||||| |||| ||| || || | ||||| ||| || | ||||| | | Sbjct 1381 CCCAATCGGCCTTCTTCTTGATGCAAGGAATGGTCTCGATGGCATTGAAGAGGTATGTGC 1440 Query 127770 TTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCA 127829 || | | | || |||||||| | || ||||| || ||||| ||| |||| | Sbjct 1441 GTTGAGCTTGCTCCTTGATGTATGTGTCAATGAGGAGGGAGTATGTCTCGGCGTGAATGT 1500 Query 127830 TTTC-ATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCG 127888 | || || || || || ||||||| |||| ||||| || || ||||| | Sbjct 1501 TCTCGATCATAATTTGGAAAC-CGTAGAAGCAGCGGGCTTCTGGGATTTGGACCTC-GCT 1558 Query 127889 GCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAG 127947 || || | | || ||||| |||||||| || ||| | || || || || || Sbjct 1559 GCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTCCGACGCGGCGAAGAAAGCGAG 1618 Query 127948 GATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCGAGATC 128004 | | ||||| | | |||| ||||| | || | |||||||||| ||| || Sbjct 1619 AACGTGGGAGATGAAGTAGCGCTCATCGTCGTTGAGGCGGTTGTTCCAGTCGTGGAGGTC 1678 Query 128005 CTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||| |||||||| | |||||| || ||||| Sbjct 1679 CTTGGAGAGATCAATCTCCTCTGCTGTCCA 1708 >seq498 Length=2934 Score = 123 bits (136), Expect = 3e-23 Identities = 323/489 (66%), Gaps = 14/489 (3%) Strand=Plus/Plus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 |||||||||||||| || |||||||| || |||||||| || | ||||| || | Sbjct 2173 CGGAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCAGCCAGCAAAGTGCATGGATGTG 2232 Query 115618 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 115677 | |||| | |||||| | |||| || ||| | | ||||| ||||| |||||| Sbjct 2233 ATCTTGCCCATTGTTGGGTCCTTCATGTGGATGTTGAGAGACTGGGACTGATCAATGAAG 2292 Query 115678 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTT 115734 ||| || || || ||||| | | | | | | || | || ||||| || || Sbjct 2293 GCTCCACGGTCAGCAGCCATCTGGACGA--TGGTGCG-CTGGGAGATCTCCCAGACGGTC 2349 Query 115735 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCC 115794 | |||||| ||| || || | ||||| | ||| |||||||| ||||| || | Sbjct 2350 TTATAGAGGGCCTTGATGTCGGCAGGGATGTTGGGGATGTTTTGGATGGAGCCTCCGTCG 2409 Query 115795 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCT----C 115850 || ||| | | |||||| | | ||||| ||||| || | | |||| | Sbjct 2410 GCGATGATGCGGTTCTTCATGTTGTCAGACCACAGACCCATATCGACCAAGTCCTTGAGC 2469 Query 115851 CACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTT 115910 || ||| | || ||||| ||||| || || ||| || | | || ||||| Sbjct 2470 AACCAGGGG----TTAACAACTTGGAACTCGCCAGCCAGGACACGACGCGAGTAAATGTT 2525 Query 115911 GGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGG 115970 | ||||||||||| |||||||| ||| || | || |||| |||||||| ||||| Sbjct 2526 CGAGGTGTATGGCTCGAAGCACTCGTTGAAGCCGAGAATCTGGGAGGTGGAGGCAGTGGG 2585 Query 115971 CATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGC 116030 ||||||||| | ||| || |||||||| ||| | | | || | ||||||| | Sbjct 2586 CATGGGTGCAACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGGGCCTTGAGAGA 2645 Query 116031 GTCCCAGTC 116039 ||||||||| Sbjct 2646 GTCCCAGTC 2654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613454438380800