Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3646 253 2e-62 seq977 122 9e-23 seq4873 118 1e-21 seq4907 102 8e-17 >seq3646 Length=8928 Score = 253 bits (280), Expect = 2e-62 Identities = 580/863 (67%), Gaps = 25/863 (3%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| ||||| || ||||| || ||||| || || ||||| || || | Sbjct 884 CATGACACCAGTCTTTTGGTAGTCGCCGACGCGCTTCTCGAAGAAGTTAGTCTTACCGGC 943 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCC 132707 || ||| ||| | ||| || || || |||||||| | |||||| ||| | |||| Sbjct 944 CAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCCGATTTGTAGAACTTCTCGTTGCC 1003 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCA 132767 || || || |||||||||||||| |||||||| ||||||||| ||| | | Sbjct 1004 GAG-AGAAAGA--AGCAGCCTGTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGC 1060 Query 132768 ATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 || | || ||||| ||||| || || || ||||| || || |||||| ||| | Sbjct 1061 GTTCATGCCGAGCAG-CGCACAGGGAAGTGCCTCGGTCAGGAACTCTTGCTCAATGCTAA 1119 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886 | || ||||| | || || ||| | | ||| || || || | || || Sbjct 1120 CAGCCTCGGTAATGACGTCTTGGACGGCCTGCTTGCTTGGGCGGTGTTTAAGGTGAGAGA 1179 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 | | | ||| || ||||| || | |||||||| | ||||||||| ||||| || Sbjct 1180 AGAGGAGGCAGGCGAAGTCAGTGTGGAGACCCTCGTCGCGGGAAATGAGCTCGTTAGAGA 1239 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 | || | ||| | ||||||||| || || || ||||| || |||| ||||| ||| | Sbjct 1240 AGGTAAGGCCAGCCATGAGGCCACGCTTCTTAAGCCAGAAAATGGATGCGAAGGAGCCAG 1299 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 | ||||| | ||||| ||||| ||||| || || || |||| | |||| || | || | Sbjct 1300 AGAAGAAAATACCCTCAACGGCAGCGAAGGCAACGAGACGCTGGGCGAAGGTAGAATCCT 1359 Query 133067 TG-CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCG 133125 || || | |||||| | | ||||| |||||||| | |||| ||| || || || ||| Sbjct 1360 TGTCTTG-GATCCACCTGACAGCCCAATCGGCCTTCTTCTTGATGCAAGGAATGGTCTCG 1418 Query 133126 ATGGCGTTCAACA---AACGGAGTTTCTCT---TCCGAGGAACGCACGTAGGTGTCGATG 133179 ||||| || || | | | ||| || ||| | | ||| ||||| ||| Sbjct 1419 ATGGCATTGAAGAGGTATGTGCGTTGAGCTTGCTCCTTG------ATGTATGTGTCAATG 1472 Query 133180 AGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCAC 133239 ||| || || | || | ||| | |||||| || ||||| || ||||| ||||| Sbjct 1473 AGGAGGGAGTATGTCTCGGCGTGAATGTTCTCGATCATAATTTGGAAACCGTAGAAGCAG 1532 Query 133240 CGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATG 133299 || || || | || || || ||| ||||||| || || |||||||| || Sbjct 1533 CGGGCTTCTGGGATTTGGACCTCGCTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATT 1592 Query 133300 CCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTC 133359 ||||| |||||||| || || || ||||| |||||| | |||||| | |||||| Sbjct 1593 CCGTCCGACGCGGCGAAGAAAGCGAGAACGTGGGAGATGAAGTAGCGCTCATCGTCGTTG 1652 Query 133360 AAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAAC 133416 | ||| | ||||||| | ||||||||| || || | |||||| | ||||| || Sbjct 1653 AGGCGGTTGTTCCAGTCGTGGAGGTCCTTGGAGAGATCAATCTCCTCTGCTGTCCAGAAA 1712 Query 133417 GACGCCTCGGCTTTTTTGTACAT 133439 || ||||| || || |||||||| Sbjct 1713 GAGGCCTCCGCCTTCTTGTACAT 1735 >seq977 Length=6114 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| ||||||||| | || |||||| || |||| | | | | |||| | | || Sbjct 4332 ACTGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACCATCGACAACGTTAAGAGC 4391 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || | || ||||| |||||||||||| | ||||| || || || || | ||| ||||| Sbjct 4392 AAGATTCAA-GACAAGGAGGGAATTCCCCCGGACCAGCAACGTCTGATCTTCGCCGGCAA 4450 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || || || |||| ||||||||| ||||||||||||||| ||||| | || || || Sbjct 4451 GCAACTTGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTCCA 4510 Query 38447 TTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| || | || || Sbjct 4511 CTTGGTCCTCCGTCTGCGTGGTGG 4534 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| || || || |||| || || | || Sbjct 4764 ATGCAGATTTTTGTCAAGACTCTTACGGGCAAGACGATTACGCTCGAGGTGGAATCATCC 4823 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | |||| || || | ||||| ||||| ||||| | ||||| Sbjct 4824 GATACTATCGACAATGTTAAGAGCAAGATTCAAGACAAGGAGGGTATTCCTCCGGACCAG 4883 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| ||||| ||| |||| || | |||||| | ||||||||| Sbjct 4884 CAGCGCCTGATTTTCGCAGGCAAGCAGTTGGAGGATGGCCGCACCTTGTCGGACTACAAC 4943 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || ||||| | || ||||||||||| || ||| Sbjct 4944 ATTCAGAAGGAGTCCACTCTGCATTTGGTTCTCCGT 4979 >seq4873 Length=13461 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || |||||||| || |||||| | || || ||| | || Sbjct 6385 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCATCC 6326 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || || |||| ||||| |||||||||||| | ||||| Sbjct 6325 GACACTATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 6266 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| ||||| || || | |||||||| ||||||||| Sbjct 6265 CAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGACTACAAC 6206 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||||| ||||| | || || || ||||| ||| Sbjct 6205 ATCCAGAAGGAGTCCACTCTTCACTTGGTCCTG 6173 >seq4907 Length=24529 Score = 102 bits (112), Expect = 8e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || | |||||||| ||||||||| | || |||||| || |||| | | Sbjct 4311 TTCGTCAAGACCTTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCCGATACTATC 4370 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| ||||| ||||||||||| | ||||| ||||| || Sbjct 4371 GACAATGTCAAGTCGAAGATCCAAGACAAGGAGGGAATTCCTCCGGACCAGCAGCGCCTG 4430 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | || ||||| ||||| || || | |||||||| ||||||||||||||| ||| Sbjct 4431 ATCTTTGCTGGCAAGCAGCTCGAGGATGGACGCACCCTTTCCGACTACAACATCCAGAAG 4490 Query 38433 G 38433 | Sbjct 4491 G 4491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500129785139200