Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq515 125 9e-24 seq3332 120 4e-22 seq4494 105 8e-18 >seq515 Length=6877 Score = 125 bits (138), Expect = 9e-24 Identities = 226/327 (69%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || ||||| | || || || || Sbjct 5222 TCGAAATCCTCACCACCCAAGTGGGTGTCACCAGCGGTAGAAAGAACCTCGAAAGCGCCA 5163 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | |||||| | | || ||||| || || || ||||| || || | || | | Sbjct 5162 CGGTCAATGGACAGGAGAGACACATCGAAGGTTCCTCCACCAAGATCGTA---GACAATG 5106 Query 7577 TTCGTATCG-TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | || || | | | ||||||| |||||||| |||| || || || ||||| || Sbjct 5105 ATC-TGGCGCTCACCGTCGGTCTTATCAAGACCGTAGGCGAGGGCGGCGGCGGTTGGCTC 5047 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | ||| || ||| ||| || || ||||| | | || || || || ||||||| Sbjct 5046 GTTGACAATGCGGAGAACGTTAAGTCCGGCAATGATACCGGCGTCCTTGGTGGCTTGTCT 4987 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||| |||||||| ||||| || ||||| |||| ||||| ||||||||||| Sbjct 4986 CTGGTTGTCGTTGAAGTAGGCGGGGACGGTGACGACGGCGTGGGTGACCTTCTTACCGAG 4927 Query 7756 ATACGATTCCGCGATATCTTTCATTTT 7782 || || || |||| || ||||| || Sbjct 4926 GTAAGACTCAGCGACCTCCTTCATCTT 4900 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/190 (70%), Gaps = 3/190 (2%) Strand=Plus/Minus Query 7964 GTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTA 8023 ||||| || ||||| || | ||||||||| || ||||| |||| || || || | Sbjct 4663 GTGTTCTTTGGGTTTGCAGCGGCTTGGTTCTTTGCTGCGTCTCCGACCAGGCGCTCCTCC 4604 Query 8024 TTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATT 8083 | | || || |||||||| |||||||| ||| | ||||||||||| | | ||| Sbjct 4603 T---CGGTGAATGCGACGTAAGATGGGGTAATTCTGTGACCTTGGTCGTTGACGAGAATC 4547 Query 8084 TCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCG 8143 || ||| | | | | ||| ||||| || || || || ||||| |||||||||||| Sbjct 4546 TCGACGGCGCCACCCTTCATGACACCGACACAAGAGTAAGTGGTTCCCAAATCAATACCG 4487 Query 8144 ATTGCTTGAG 8153 || || ||| Sbjct 4486 ATAACTGGAG 4477 >seq3332 Length=781 Score = 120 bits (132), Expect = 4e-22 Identities = 212/309 (69%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463 ||||||| || || || || ||||| | |||||| || ||| | ||||||| Sbjct 473 CTTTCTTGTGCTTGCGCTTGAACTCGTTGACGAAGTGGTTAACGAGACGGTTGTCGAAAT 532 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523 | |||||||||||||| || || || || || | ||||| || |||||||| | || | Sbjct 533 CCTCACCACCCAAGTGAGTGTCACCGGCAGTGGACTTGACCTCGAAGATACCCTCCTCGA 592 Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583 || | | | || ||||| || || |||||||| || || || || || ||||| | Sbjct 593 TGGTGAGGAGAGAGACATCGAAAGTTCCACCACCAAGATCGAAGATCAGGACGTTGCGCT 652 Query 7584 CGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAA 7643 | | || ||||| || |||||||| ||||| || || || || || || || || | Sbjct 653 CACCCTCGACCTTCTTGTCAAGACCGTAGGCGATGGCAGCGGCGGTAGGCTCGTTGATGA 712 Query 7644 TACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAAT 7703 |||| || ||| || || || || | ||||| || || || || || || || | Sbjct 713 TACGGAGGACGTTGAGTCCGGCGATGAGACCGGCATCCTTGGTAGCCTGACGCTGGGAGT 772 Query 7704 CGTTAAAGT 7712 |||| |||| Sbjct 773 CGTTGAAGT 781 >seq4494 Length=18764 Score = 105 bits (116), Expect = 8e-18 Identities = 200/291 (69%), Gaps = 14/291 (5%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||||||||| |||||||||||||| || || || ||| | ||||| || || | || Sbjct 16424 ATCGAAATCCTCACCACCCAAGTGAGTGTCACCATTGGTGGACTTGACCTCGAAAACGCC 16365 Query 7516 TCCTTCA--ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 |||| || | | | || | ||| || || || |||||||| || | | Sbjct 16364 --CTTCTGGATCTCGAGGACGGAGATATCGAAGGTTCCTCCACCCAGATCGTAGACAGCA 16307 Query 7574 ACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 | | || | || || || ||| || ||||| || |||| ||| || || || || Sbjct 16306 ATGATCCTGTCCTCCTC------CTTCTCAAGACCATATGCGAGAGCAGCGGCGGTAGGC 16253 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTT 7691 || |||| || ||| ||| ||||||||||||||| ||| | ||||| || || |||| Sbjct 16252 TCGTTAACAACACGGAGAACGTTCAGGCCAGCAAT--TTGACCGGCATCCTTGGTTGCTT 16195 Query 7692 GTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGA 7742 | || || || ||||| ||||| || ||||| || || || |||| | ||| Sbjct 16194 GACGCTGGGAGTCGTTGAAGTAAGCGGGGACAGTAACAACGGCGTTCTTGA 16144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635078178579200