Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq499 176 6e-39 seq3646 123 3e-23 >seq499 Length=3129 Score = 176 bits (194), Expect = 6e-39 Identities = 571/878 (65%), Gaps = 19/878 (2%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| || ||| | || || || || || |||||||| Sbjct 974 CCGCAGCACATGATTATGCGTGTTGCGGTGGGCATTCACGGCGAGGATATTGAGAAGACA 915 Query 111672 TTGGAGACATACGACAAGATGTCC-CGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||||||| || ||||| | || |||| ||||| | ||||| ||||| Sbjct 914 ATCGAGACATACAACCTCATGTCTTCCAAATAC-TTCACACACGCTTCCCCAACACTCTT 856 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| || ||||||||| | || |||| || ||| | | | | |||||||| Sbjct 855 CAATGCCGGTACACCACAGGCTCAGCTGTCGTCCTGCTTCTTGGTCGACATGAAGGAGGA 796 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || | || || || | ||| |||| |||||| ||||||||| || || Sbjct 795 CAGTATTGAGGGTATCTATGACACACTCAAGACCTGTGCCATGATCTCAAAGACCGCCGG 736 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTATTAGAGGTACAA 111909 |||||||| || |||||||| | || | |||| | || | || ||||| | Sbjct 735 AGGTATCGGATTGAACATCCATCGTATCCGTGCCA-CTGGTGCATACATCGCTGGTACCA 677 Query 111910 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 111969 | || | || ||||||| |||| ||||| ||||| || ||| ||| || | || | Sbjct 676 ACGGAAACTCGAATGGTATCGTTCCCATGCTCCGCGTCTTCAACAACACTGCAAGATACG 617 Query 111970 TAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACG 112026 | |||||| ||| ||| || || |||| |||| | ||||||||||||| Sbjct 616 TTGACCAAGGTGGCAACAAGCGCCCTGGTGCTTTCGCCATCTACGTCGAGCCATGGCACG 557 Query 112027 CGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCC 112086 ||||| || | |||||||| || ||| | ||||| || | ||||| | || || Sbjct 556 CGGATGTCTTTGAGTTCCTAGACTTGAGAAAGAACCACGGCAAGGAGGAAGTCCGTGCCC 497 Query 112087 GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTG 112146 | || | |||| |||||||||||| || ||||||||||||||| | |||||| ||| | Sbjct 496 GTGACTTGTTCTACGCTCTCTGGATCCCGGATCTCTTCATGAAGCGTGTTGAGAAGAACG 437 Query 112147 GCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGG 112206 | | ||| | ||| | || || || || || || | | || | || || | Sbjct 436 GTGACTGGACCCTCATGTGCCCCAACGAGTGCCCTGGGTTGGCTGACGTTTACGGCGATG 377 Query 112207 AGTTTGAAGCCCTCTACACAAAGTACGA---GGAAGAAA---GTCGGGCGACTGCGACGG 112260 ||||||| || || ||| | ||||| ||| | || |||| ||| | || Sbjct 376 AGTTTGAGGCGCTTTACGAGAGCTACGAGAGGGATGGAAAGGGTCGCAAGACCATCAAGG 317 Query 112261 TGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 |||| || | ||| | | |||||| || ||||||| ||||| || | || | Sbjct 316 -CCCAGAAGC-----TTTGGTACTCCATTCTCGAGGCTCAAACTGAGACAGGAAACCCTT 263 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 ||||| ||||| || || || |||| ||||| || || ||||| | ||| || Sbjct 262 TCATGCTGTACAAGGATGCTTGCAACCGCAAGAGCAACCAGAAGAACCTCGGTACCATTC 203 Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 112440 || |||||||| || ||||| || | || | | | |||||| || |||| Sbjct 202 GCAGCTCCAACCTTTGCACAGAGATTGTCGAGTACTCTGCTCCTGATGAGGTTGCCGTGT 143 Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 112478 ||||| | ||||| | || || || | |||||| ||| Sbjct 142 GTAACTTGGCATCCCTTGCCCTGCCAACGTATGTTGAT 105 >seq3646 Length=8928 Score = 123 bits (136), Expect = 3e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 ||||| | |||||| | || |||| || || | ||||| || ||||||||| | | | Sbjct 1432 CTCTTCAATGCCATCGAGACCATTCCTTGCATCAAGAAGAAGGCCGATTGGGCTGTCAGG 1373 Query 102150 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 102208 ||| | | |||| | | | |||| || |||| ||| | || || || ||||| Sbjct 1372 TGGATCCAAGACAAGGATTC-TACCTTCGCCCAGCGTCTCGTTGCCTTCGCTGCCGTTGA 1314 Query 102209 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 102268 |||||| ||||||||||| |||||| | |||| ||||| |||||||| || ||||| Sbjct 1313 GGGTATTTTCTTCTCTGGCTCCTTCGCATCCATTTTCTGGCTTAAGAAGCGTGGCCTCAT 1254 Query 102269 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 | | || || |||||| |||||||| || || || |||||||| |||||| Sbjct 1253 GGCTGGCCTTACCTTCTCTAACGAGCTCATTTCCCGCGACGAGGGTCTCCAC 1202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620689016153600