Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq499 176 5e-39 seq2886 89.7 6e-13 seq2891 87.8 2e-12 seq2809 87.8 2e-12 seq3228 86.0 7e-12 >seq499 Length=3129 Score = 176 bits (194), Expect = 5e-39 Identities = 592/905 (65%), Gaps = 25/905 (3%) Strand=Plus/Plus Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390 ||| || | ||| || || || | |||||| || |||| ||| | ||||||||| || Sbjct 168 GTACTCGACAATCTCTGTGCAAAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTT 227 Query 110391 CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGA 110450 ||| |||||| |||||||| || |||||| | ||| | || || || || || | Sbjct 228 GCTCTTGCGGTTGCAAGCATCCTTGTACAGCATGAAAGGGTTTCCTGTCTCAGTTTGAGC 287 Query 110451 CTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGT--TGCGTTAGCGAGACCTTC 110507 || |||||||| | ||| | | || | ||| || || |||| | | || || Sbjct 288 CTCGAGAATGGAGTACCAAAGCTTCTG-GGCCTTGATGGTCTTGCG--ACCCTTTCCATC 344 Query 110508 CTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTT 110567 | |||||| | ||| | ||||||| || | ||||| || |||| | |||| Sbjct 345 CCTCTCGTAGCTCTCGTAAAGCGCCTCAAACTCATCGCCGTAAACGTCAGCCA-ACCCAG 403 Query 110568 CGC-CTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACA 110626 || || || ||| || | ||||| ||| | || || |||||| | ||||||||| | Sbjct 404 GGCACTCGTTGGGGCACATGAGGGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGA 463 Query 110627 GGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGT 110686 | || || ||||| | || |||| | ||||||| ||| | || || | || |||| Sbjct 464 GATCCGGGATCCAGAGAGCGTAGAACAAGTCACGGGCACGGACTTCCTCCTTGCCGTGGT 523 Query 110687 TGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA 110746 | | | || | || || | || ||||| ||||||||| |||| |||| |||| Sbjct 524 TCTTTCTCAAGTCTAGGAACTCAAAGACATCCGCGTGCCATGGCTCGACGTAGATGGCGA 583 Query 110747 TGGATCCCTTACGACGAC-----CCGCCT-GGTTAACATAGCGTGCTGTGGCATTGAAGA 110800 | || | | || || ||| ||| ||| || | ||| ||| ||||||| Sbjct 584 AAGCACC---AGGGCGCTTGTTGCCACCTTGGTCAACGTATCTTGCAGTGTTGTTGAAGA 640 Query 110801 CCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTA 110859 | | |||||| |||| || |||| || | || || ||||| || | || || | Sbjct 641 CGCGGAGCATGGGAACGATACCATTCGAGTTTCCGTTGGTACCAGCGATGTATGCACC-A 699 Query 110860 TTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCA 110919 ||||||| || ||||| | || || ||||| || || ||| || ||| Sbjct 700 GTGGCACGGATACGATGGATGTTCAATCCGATACCTCCGGCGGTCTTTGAGATCATGGCA 759 Query 110920 CAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAA 110978 || ||| ||||||| |||| ||||| ||||| || |||| || | | | || Sbjct 760 CAGGTCT-TGAGTGTGTCATAGATACCCTCAATACTGTCCTCCTTCATGTCGACCAAGAA 818 Query 110979 GCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAAT 111038 ||| || |||| ||||| | || || || |||||||||||||| || | || || | Sbjct 819 GCAGGACGACAGCTGAGCCTGTGGTGTACCGGCATTGAAGAGTGTTGGGGAAGCGTGTGT 878 Query 111039 GAACAGACCTTGG--GACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCG 111096 ||| | |||| ||||| ||||||||| |||| || | ||| | ||| Sbjct 879 GAA--GTATTTGGAAGACATGAGGTTGTATGTCTCGATTGTCTTCTCAATATCCTCGCCG 936 Query 111097 TGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCA 111156 ||||| || | ||||| ||||| | ||| | || ||| | || | |||||||||| Sbjct 937 TGAATGCCCACCGCAACACGCATAATCATGTGCTGCGGCCTCTCAGCAACCTTTCCATCA 996 Query 111157 ACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCA 111216 | ||| |||| || |||| || ||||||| ||||||||| | | ||||||| Sbjct 997 AGACGGAGAAGATACGATCTCTCCAGTGTCTTGAAGCCAAAGTATTGGTAGTTGAAATCA 1056 Query 111217 CGATC 111221 || || Sbjct 1057 CGGTC 1061 >seq2886 Length=2655 Score = 89.7 bits (98), Expect = 6e-13 Identities = 167/239 (70%), Gaps = 10/239 (4%) Strand=Plus/Plus Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| || ||||| || ||||| || |||||||| ||| | ||||| |||| || | | Sbjct 1883 GAATAGCTCACGGACGCGCTTGGCACCAACACCAACGTAGATCTCGTCGAA-TTCACTAC 1941 Query 11796 AGAACACTGAAT--GAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 | ||| |||| ||| || || | ||| ||||| | || ||||| ||||||||| Sbjct 1942 CGGACA-TGAAGAAGAATGGGACGCCCGCCTCGCCAGCAACTGCACGAGCCAGGAGAGTC 2000 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACT--TC 11911 || || ||||| || | |||| | || || | || || | |||| ||||| || Sbjct 2001 TTTCCAGTACCGGGGGGACCAACAAGGAGAACACCCTTAGGAAGCTTGCCACCAAGAGTC 2060 Query 11912 CA-AAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | || | | |||| ||||| ||||||||||||| ||| | ||||||||||| || Sbjct 2061 GAGAATTTTC---CAGGGTTCTTTAGGAAGTCCACAAGCTCTTGCAGTTCCTCCTTCGC 2116 >seq2891 Length=2364 Score = 87.8 bits (96), Expect = 2e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 613 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 554 Query 136777 GGGAACAG 136784 | || ||| Sbjct 553 GTGACCAG 546 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 1009 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 950 Query 136777 GGGAACA 136783 | || || Sbjct 949 GTGACCA 943 >seq2809 Length=1925 Score = 87.8 bits (96), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 1540 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 1599 Query 136777 GGGAACAGCTTTTAGAT-ATATTTTTTG 136803 | || ||| | || |||||||||| Sbjct 1600 GTGACCAGATCACGAATCATATTTTTTG 1627 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 136699 TCAAACGCACCGTTCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTC 136758 ||||| | ||| || ||||||||||||||||||||||||||| |||||||||||||| Sbjct 1239 TCAAAAACCCCGGTCGCTTAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTC 1298 Query 136759 ACGGGTTCGAGCCCCGTTGGGAACA 136783 || |||||| || ||| | || || Sbjct 1299 GCGAGTTCGACCCTCGTAGTGACCA 1323 >seq3228 Length=2204 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 1405 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 1464 Query 136777 GGGAACA 136783 | || || Sbjct 1465 GTGACCA 1471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588925348064000