Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq499 228 1e-54 seq3646 105 8e-18 >seq499 Length=3129 Score = 228 bits (252), Expect = 1e-54 Identities = 623/941 (66%), Gaps = 21/941 (2%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 |||||| |||| ||||| | |||||||| || || || || |||||| | | | | Sbjct 109 ACATACGTTGGCAGGGCAAGGGATGCCAAGTTACACACGGCAACCTCATCAGGAGCAGAG 168 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 ||||| | ||| ||||| || | |||||| || ||| || || | ||||| ||||| Sbjct 169 TACTCGACAATCTCTGTGCAAAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTG 228 Query 106568 CTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAC 106627 ||||| |||||| ||||||||||| |||||| | || | || ||||| || || | | Sbjct 229 CTCTTGCGGTTGCAAGCATCCTTGTACAGCATGAAAGGGTTTCCTGTCTCAGTTTGAGCC 288 Query 106628 TTGAGAATTGCCTTCCACA-CATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTC 106683 | |||||| | | ||| | | || | | || | |||| ||| || ||| || Sbjct 289 TCGAGAATGGAGTACCAAAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTTCCATC 344 Query 106684 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG 106743 | |||||| | ||| || || |||||||| || || |||| | | || || Sbjct 345 CCTCTCGTAGCTCTCGTAAAGCGCCTCAAACTCATCGCCGTAAACGTCAGCCAACCCAGG 404 Query 106744 TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAG 106803 || || || || | || | ||| | ||| || |||||| ||||||||||| || Sbjct 405 GCACTCGTTGGGGCACATGAGGGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGAG 464 Query 106804 GTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGT 106862 || || ||||| || | | || | || | ||| || | || || | || |||| Sbjct 465 ATCCGGGATCCAGAGAGCGTAGAACAAGTCACGGGCACGGA-CTTCCTCCTTGCCGTGGT 523 Query 106863 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 106922 | || || || |||||||| | || |||||||||||||||||| | |||| |||| Sbjct 524 TCTTTCTCAAGTCTAGGAACTCAAAGACATCCGCGTGCCATGGCTCGACGTAGATGGCGA 583 Query 106923 TAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACG 106978 || || | | | | ||| |||| | || || | || ||| ||| || ||| Sbjct 584 AAGCACCAGGGCGCTTGTTG-CCACCTTGGTCAACGTATCTTGCAGTGTTGTTGAAGACG 642 Query 106979 CGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTG 107038 || ||||| |||| ||||||| || | || || || || || | | || Sbjct 643 CGGAGCATGGGAACGATACCATTCGAGTTTCCGTTGGTACCAGCGATGTATGCACCAGTG 702 Query 107039 GCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 107098 || | | | |||||||| || || ||||| || || ||||||||| ||||| Sbjct 703 GCACGGATACGATGGATGTTCAATCCGATACCTCCGGCGGTCTTTGAGATCATGGCACAG 762 Query 107099 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 107158 | | || || |||||||||| | || ||||||||| || ||| | |||||| Sbjct 763 GTCTTGAGTGTGTCATAGATACCCTCAATACTGTCCTCCTTCATGTCGACCAAGAAGCAG 822 Query 107159 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 |||| ||| | ||||||||| ||||||||||| ||||| | ||||| |||| Sbjct 823 GACGACAGCTGAGCCTGTGGTGTACCGGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAA- 881 Query 107219 ATACCTTGG--GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 107276 || |||| ||||| || ||||||||| | ||||| || || ||||| | Sbjct 882 GTA-TTTGGAAGACATGAGGTTGTATGTCTCGATTGTCTTCTCAATATCCTCGCCGTGAA 940 Query 107277 TGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCC 107336 |||| | || |||||||||| ||||| || || | || | | ||||| || | Sbjct 941 TGCCCACCGCAACACGCATAATCATGTGCTGCGGCCTCTCAGCAACCTTTCCATCAAGAC 1000 Query 107337 GTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 107376 | ||||||| | || |||| || || |||| |||||||| Sbjct 1001 GGAGAAGATACGATC-TCTCCAGTGTCTTGAAGCCAAAGTA 1040 >seq3646 Length=8928 Score = 105 bits (116), Expect = 8e-18 Identities = 203/297 (68%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||||||||| || |||||||| || || || |||||| ||||| | |||||| || Sbjct 1202 GTGGAGACCCTCGTCGCGGGAAATGAGCTCGTTAGAGAAGGTAAGGCCAGCCATGAGGCC 1261 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| |||| | ||| || || |||||||| |||||||| || Sbjct 1262 ACGCTTCTTAAGCCAGAAAATGGATGCGAAGGAGCCAGAGAAGAAAATACCCTCAACGGC 1321 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCATTG 117463 || || |||| || |||| |||||||| || | |||| | | ||| | | | Sbjct 1322 AGCGAAGGCAACGAGACGCTGGGCGAAGG-TAGAATCCTTGTCTTGGATCCACCTGACAG 1380 Query 117464 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCT 117523 |||| | |||||||||| || || || | || | |||||| | || | | | Sbjct 1381 CCCAATCGGCCTTCTTCTTGATGCAAGGAATGGTCTCGATGGCATTGAAGAGGTATGTGC 1440 Query 117524 TTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAA 117580 || || | ||||| |||||| ||||||| | || ||||| ||| | |||| Sbjct 1441 GTTGAGCTTGCTCCTTGATGTATGTGTCAATGAGGAGGGAGTATGTCTCGGCGTGAA 1497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589930061651200