Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudogymnoascus_20sp._20VKM_20F-
3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq977 120 2e-22
seq4873 84.2 2e-11
>seq977
Length=6114
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||||||| || ||| ||| || ||||| ||||| || || | | || | || |||
Sbjct 4972 ACCAAATGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGACAAGGTGCGGCCATCCTCC 4913
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
|||||||| || || || ||||| ||||| || |||| |||| ||||||||||| |
Sbjct 4912 AACTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGA 4853
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || ||| | | || || || | |||||||| | ||||||||| ||
Sbjct 4852 ATCTTGCTCTTAACATTGTCGATAGTATCGGATGATTCCACCTCGAGCGTAATCGTCTTG 4793
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| | ||| || ||||||||||||||
Sbjct 4792 CCCGTAAGAGTCTTGACAAAAATCTGCAT 4764
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || || ||| || ||||| |||||||| || ||| | || |||| ||
Sbjct 4744 ACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCA 4685
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| ||||||||| || || ||||| ||||| || |||| |||| |||||||||||| |
Sbjct 4684 AGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGA 4625
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || || | | | || |||| ||| ||||||| || || || ||
Sbjct 4624 ATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGTCTTG 4565
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || | || || || || ||||||||
Sbjct 4564 CCAGTGAGGGTCTTAACGAAGATCTGCAT 4536
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622
||||| ||| ||| || ||||| ||||||||||| ||| | || | || || | |||
Sbjct 5195 ATGTAAAGTGGACTCCTTCTGAATGTTGTAATCAGACAGAGTACGGCCATCCTCTAGCTG 5136
Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
||| || ||||| || || ||||| || |||| || | ||||||||| || |||||
Sbjct 5135 CTTGCCCGCAAAAATTAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGGATCTT 5076
Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742
|| || | | | | || |||| ||| ||||||| |||||| || ||||| ||
Sbjct 5075 AGACTTGACGTTATCGATGGTATCCGACGACTCGACCTCCAACGTAATTGTCTTTCCGGT 5016
Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766
| ||| || || || || |||||
Sbjct 5015 GAGAGTCTTGACGAAGATTTGCAT 4992
Score = 84.2 bits (92), Expect = 2e-11
Identities = 152/221 (69%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGA---CTT 48605
|| || | |||||| || || |||||||| || || || ||||| || || |||
Sbjct 5437 AGACGGAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTT 5378
Query 48606 CGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCC 48665
| ||| ||| | |||||||| ||||| ||||| ||||| || |||| || | |||
Sbjct 5377 CCATCCTCG---AGTTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCC 5321
Query 48666 TCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACC 48725
||||| || |||||| || || | | | || || | ||| ||||| |
Sbjct 5320 TCCTTATCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCGAGA 5261
Query 48726 GTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || |||||||||| || || || |||||||||||
Sbjct 5260 GTAATAGTCTTTCCCGTCAGGGTCTTGACGAAAATCTGCAT 5220
>seq4873
Length=13461
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || ||| ||| || || || ||||| || || || | || | || ||
Sbjct 6177 ACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCG 6236
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| |||||| ||||| || |||| ||||| || |||| ||||| |||||||||||
Sbjct 6237 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGG 6296
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
||||| || ||| | | || || || | ||||||||| | || || || ||
Sbjct 6297 ATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTG 6356
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||||| || || || || || |||||
Sbjct 6357 CCCGTCAGGGTCTTCACGAAGATTTGCAT 6385
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380905658382240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |