Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq499 230 4e-55 seq3646 168 1e-36 >seq499 Length=3129 Score = 230 bits (254), Expect = 4e-55 Identities = 648/977 (66%), Gaps = 21/977 (2%) Strand=Plus/Plus Query 221702 AGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATC 221761 ||||||| | |||| |||||||||||| ||||| || | |||| | ||| Sbjct 121 AGGGCAAGGGATGCCAAGTTACACACGGCAACCTCATCAGGAGCAGAGTACTCGACAATC 180 Query 221762 TCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTG 221821 ||||| || |||||| || ||||| || |||| || || || |||||| ||| Sbjct 181 TCTGTGCAAAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGCTCTTGCGGTTG 240 Query 221822 GCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTG 221881 ||| |||||||| ||||| || || || ||||| |||||| | ||||| | Sbjct 241 CAAGCATCCTTGTACAGCATGAAAGGGTTTCCTGTCTCAGTTTGAGCCTCGAGAATGGAG 300 Query 221882 TCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTT-TCATACCC 221940 | ||| || | ||||| || | ||||| | | | || || | || || | Sbjct 301 TACCAAAGCT-TCTGGGCCTTGATGG--TCTTG-CGACCCTTTCCATCCCTCTCGTAGCT 356 Query 221941 GGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGG 222000 || ||| ||||||| || ||||| | || ||| || || ||| | ||| Sbjct 357 CTCGTAAAGCGCCTCAAACTCATCGCCGTAAACGTCAGCCAACCCAGGGCACTCGTTGGG 416 Query 222001 ACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060 ||||| || |||||| ||| | | || | || ||||||||| ||||||||||| Sbjct 417 GCACATGAGGGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGAGATCCGGGATCCA 476 Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATC 222120 || || | || | || | || || |||||| ||||| ||| || |||| || Sbjct 477 GAGAGCGTAGAACAAGTCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTTTCTCAAGTC 536 Query 222121 CAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCG 222180 | |||||||| | || |||||||| ||||| | |||| ||| | ||| || || || Sbjct 537 TAGGAACTCAAAGACATCCGCGTGCCATGGCTCGACGTAGATGGCGAAAGCACCAGGGCG 596 Query 222181 CTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTA 222239 |||||||||||| || || || || | ||| | |||||||| ||| || | || | Sbjct 597 CTTGTTGCCACCTTGGTCAACGTATCT-TGCAGTGTTGTTGAAGACGCGGAGCATGGGAA 655 Query 222240 CCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC 222299 | | || || || |||||||| || ||||| ||||| ||| | || ||| Sbjct 656 CGATACCATTCGAGTTTCCGTTGGTACCAGCGATGTATGCACCAGTGGCAC---GGATAC 712 Query 222300 --TGGCAG-ACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAG 222356 ||| | || |||||||| |||||| || ||||||||||| ||| ||||||| | Sbjct 713 GATGGATGTTCAATCCGATACCTCCGGCGGTCTTTGAGATCATGGCACAGGTCTTGAGTG 772 Query 222357 TGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCT 222416 |||| ||| ||||| ||| ||||||||| | || | || || || ||||||| || Sbjct 773 TGTCATAGATACCCTCAATACTGTCCTCCTTCATGTCGACCAAGAAGCAGGACGACAGCT 832 Query 222417 GAG-ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTA 222475 ||| | |||| | || ||| || || || || || |||||||| ||||| | Sbjct 833 GAGCCTGTGGT-GTACCGGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGTATTTGGAA 891 Query 222476 GACATCAGATCGTACGTCTCTA-CGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGC 222534 ||||| || | ||| ||||| | | || | | || | || |||||||| || || Sbjct 892 GACATGAGGTTGTATGTCTCGATTGTCT-TCTCAATATCCTCGCCGTGAATGCCCACCGC 950 Query 222535 GCATCTCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGCTGGA--GAGCAGG 222592 | ||| ||||| ||| |||||||| || ||| || | | || ||| || Sbjct 951 AACACGCATAATCATGTGCTGCGGCCTCTCAGCA--ACCTTTCCATCAAGACGGAGAAGA 1008 Query 222593 TACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACC 222652 |||||| | ||||| |||||||| |||||||| | | || || || | | ||| || Sbjct 1009 TACGATCTCTCCAGTGTCTTGAAGCCAAAGTATTGGTAGTTGAAATCACGGTCGTAAAGG 1068 Query 222653 ACGGCGGCGTCCAGCTC 222669 ||||| | || ||||| Sbjct 1069 ACGGCAGAGTTGAGCTC 1085 >seq3646 Length=8928 Score = 168 bits (186), Expect = 1e-36 Identities = 549/854 (64%), Gaps = 16/854 (2%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | ||| |||||| || || ||||||||||| Sbjct 1744 ATCTGGCAGATGTACAAGAAGGCGGAGGCCTCTTTCTGGACAGCAGAGGAGATTGATCTC 1685 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 |||||||| | ||| |||| || | ||| ||||| ||| | ||| | Sbjct 1684 TCCAAGGACCTCCACGACTGGAACAACCGCCTCAACGACGATGAGCGCTACTTCATCTCC 1625 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || || || || || || || |||||||| || |||| | Sbjct 1624 CACGTTCTCGCTTTCTTCGCCGCGTCGGACGGAATTGTCAACGAGAACCTCCTCGAGCGC 1565 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| ||| || || || | || ||| || |||||||||||||| || ||| Sbjct 1564 TTCAGCAGCGAGGTCCAAATCCCAGAAGCCCGCTGCTTCTACGGTTTCCAAATTATGATC 1505 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTC 25770 || || | ||| | ||| || || || || || || ||||| | || Sbjct 1504 GAGAACATTCACGCCGAGACATACTCC---CTCCTCATTGACACATACATCAAGGAGCAA 1448 Query 25771 GCCGAGAG-AGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 || | | | || || || |||||||||| ||| || ||||||||| |||||| Sbjct 1447 GCTCAACGCACATAC-CTCTTCAATGCCATCGAGACCATTCCTTGCATCAAGAAGAAGGC 1389 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||| | | ||||||| | | || |||| || | | |||| || || || Sbjct 1388 CGATTGGGCTGTCAGGTGGATCCAAGACAAGGATTCTACCTTCGCCCAGCGTCTCGTTGC 1329 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 ||| ||||| || ||||| || || ||| || || || || |||| |||||||| || Sbjct 1328 CTTCGCTGCCGTTGAGGGTATTTTCTTCTCTGGCTCCTTCGCATCCATTTTCTGGCTTAA 1269 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||| | || || ||| || ||||||||||| | | |||||||| Sbjct 1268 GAAGCGTGGCCTCATGGCTGGCCTTACCTTCTCTAACGAGCTCATTTCCCGCGACGAGGG 1209 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCA 26069 |||||||| || || |||||||| |||| | | ||| | ||| || || Sbjct 1208 TCTCCACACTGACTTCGCCTGCCTCCTCTTCTC---TCACCTTAAACAC-CGCCCAAGCA 1153 Query 26070 AG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128 || || ||||| | |||| | |||||||| || ||| | ||||| | Sbjct 1152 AGCAGGCCGTCCAAGACGTCATTACCGAGGCTGTTAGCATTGAGCAAGAGTTCCTGACCG 1093 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGT 26188 | ||||||||| || | |||| ||||||||||||| Sbjct 1092 AGGCACTTCCCTGTGCGCTGCTCGGCATGAACGCCAACTTGATGAAGCAATACATTGAGT 1033 Query 26189 ATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACC 26248 || |||||| ||||| || || || | |||||| || | |||| Sbjct 1032 TCGTCGCCGACAGGCTGCTTCTTTCTCTCGGCAACGAGAAGTTCTACAAATCGGCCAACC 973 Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308 | |||||||| ||||| ||||| || ||| || ||||| |||||||| || ||| | | Sbjct 972 CATTCGACTTCATGGAGAACATCTCCCTGGCCGGTAAGACTAACTTCTTCGAGAAGCGCG 913 Query 26309 TCGGCGACTATCAA 26322 |||||||||| ||| Sbjct 912 TCGGCGACTACCAA 899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928764919347200