Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudogymnoascus_20sp._20VKM_20F-
3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq977 98.7 6e-15
seq4494 87.8 1e-11
>seq977
Length=6114
Score = 98.7 bits (108), Expect = 6e-15
Identities = 158/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 480552 CGAAGACGGAGTACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609
|| |||||||| |||||||| ||||| ||| ||| ||| || ||||||| ||||
Sbjct 5212 CGGAGACGGAGAACAAGATGTAAAGTGGACTC-CTTCTGAATG-TTGTAATCAGACAGAG 5155
Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669
| | | ||| || || ||||| || |||||||| || || || || || || || || |
Sbjct 5154 TACGGCCATCCTCTAGCTGCTTGCCCGCAAAAATTAGGCGCTGCTGGTCCGGTGGGATGC 5095
Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCA 480728
| ||||| ||||| ||||| ||||| || || ||||| | | | | | ||
Sbjct 5094 CCTCCTTATCTTGGATCTTAGACTTGACGTTATCGATGGTATCCGACGACTCGACCTCCA 5035
Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| | |||| || || |||||||||||||| ||||| |||||
Sbjct 5034 ACG-TAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTG 4995
>seq4494
Length=18764
Score = 87.8 bits (96), Expect = 1e-11
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803
||||||| || || || || || || || || ||||||||||| || ||||| || ||
Sbjct 16159 TTACTGTCCCCGCTTACTTCAACGACTCCCAGCGTCAAGCAACCAAGGATGCCGGTCAAA 16218
Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863
|||| || || || ||| | ||| || |||| || || || || || || || || ||||
Sbjct 16219 TTGCTGGCCTGAACGTTCTCCGTGTTGTTAACGAGCCTACCGCCGCTGCTCTCGCATATG 16278
Query 474864 GTCTTGATAAG 474874
||||||| |||
Sbjct 16279 GTCTTGAGAAG 16289
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267884083418240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |