Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq977 98.7 6e-15 seq4494 87.8 1e-11 >seq977 Length=6114 Score = 98.7 bits (108), Expect = 6e-15 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATG--AAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 || |||||||| |||||||| ||||| ||| ||| ||| || ||||||| |||| Sbjct 5212 CGGAGACGGAGAACAAGATGTAAAGTGGACTC-CTTCTGAATG-TTGTAATCAGACAGAG 5155 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | | ||| || || ||||| || |||||||| || || || || || || || || | Sbjct 5154 TACGGCCATCCTCTAGCTGCTTGCCCGCAAAAATTAGGCGCTGCTGGTCCGGTGGGATGC 5095 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCA 480728 | ||||| ||||| ||||| ||||| || || ||||| | | | | | || Sbjct 5094 CCTCCTTATCTTGGATCTTAGACTTGACGTTATCGATGGTATCCGACGACTCGACCTCCA 5035 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | |||| || || |||||||||||||| ||||| ||||| Sbjct 5034 ACG-TAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTG 4995 >seq4494 Length=18764 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 ||||||| || || || || || || || || ||||||||||| || ||||| || || Sbjct 16159 TTACTGTCCCCGCTTACTTCAACGACTCCCAGCGTCAAGCAACCAAGGATGCCGGTCAAA 16218 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 |||| || || || ||| | ||| || |||| || || || || || || || || |||| Sbjct 16219 TTGCTGGCCTGAACGTTCTCCGTGTTGTTAACGAGCCTACCGCCGCTGCTCTCGCATATG 16278 Query 474864 GTCTTGATAAG 474874 ||||||| ||| Sbjct 16279 GTCTTGAGAAG 16289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267884083418240