Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudogymnoascus_20sp._20VKM_20F-
3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq3426 123 7e-23
seq3646 118 3e-21
seq4817 96.9 1e-14
seq2066 86.0 2e-11
>seq3426
Length=8099
Score = 123 bits (136), Expect = 7e-23
Identities = 211/306 (69%), Gaps = 0/306 (0%)
Strand=Plus/Minus
Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597
||| || ||||| |||||| | ||| | ||||||| | ||||| | ||||||
Sbjct 5570 ATTCCTAACGGTACCATCATACTTGACCATGACATCTTCCAAAGCCTTGACGAGACGACG 5511
Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657
|||||| ||||||||| | || || ||||| |||||||| ||||| | |||||| |
Sbjct 5510 CTGAATGTAACCAGTTTCGGCAGTCTTGACAGCGGTATCAATAAGACCTTCGCGACCAGC 5451
Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717
||| || |||||||| | ||| ||| || || | | | ||| |||| || ||
Sbjct 5450 CATGGCGTGGAAGAAGAACTCCGATGGTGTAAGTCCTCTCAGGTACGAGTTCTCGACAAA 5391
Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777
||||| | ||||| || | || ||| || || || |||||||| | || || |
Sbjct 5390 TCCACGAGATTCGGGGGAGTAATCATCCTTTGTGAAATGCGGCAGGGTGCGGTACTTGAA 5331
Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837
||| | || |||||||| || || || |||||||||| | | ||||||| ||
Sbjct 5330 CCCGAAAGGAATACGCTTGCCCTCCACAGATTGCTGTCCCACAAGGGCAGTCATCTGGGA 5271
Query 302838 AATATT 302843
||||||
Sbjct 5270 AATATT 5265
>seq3646
Length=8928
Score = 118 bits (130), Expect = 3e-21
Identities = 241/353 (68%), Gaps = 4/353 (1%)
Strand=Plus/Minus
Query 133307 gAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATAT 133366
|||||||| ||| || || | || ||| ||| || || || || | |||||
Sbjct 1540 GAAGCCCGCTGCTTCTACGGTTTCCAAATTATGATCGAGAACATTCACGCCGAGACATAC 1481
Query 133367 TCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAACGC 133425
|| || ||||| || |||||||| || | || | ||||| || | ||||| ||
Sbjct 1480 TCCCTCCTCATTGACACATACATCAAGGAGCAAGCTCA-ACGCACATACCTCTTCAATGC 1422
Query 133426 CATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGG 133484
||| | || ||||||| || || ||||| | || |||||| | | |||||||| |
Sbjct 1421 CATC-GAGACCATTCCTTGCATCAAGAAGAAGGCCGATTGGGCTGTCAGGTGGATCCAAG 1363
Query 133485 ACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttt 133544
||||| | | | || || ||||||||||| || |||| || ||||| ||||| |
Sbjct 1362 ACAAGGATTCTACCTTCGCCCAGCGTCTCGTTGCCTTCGCTGCCGTTGAGGGTATTTTCT 1303
Query 133545 tCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGT 133604
|| ||| | ||| || ||||| |||||||| |||||||| | | |||| ||
Sbjct 1302 TCTCTGGCTCCTTCGCATCCATTTTCTGGCTTAAGAAGCGTGGCCTCATGGCTGGCCTTA 1243
Query 133605 GTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657
|| |||||||| || ||||| | ||||||| || ||||| || || |||
Sbjct 1242 CCTTCTCTAACGAGCTCATTTCCCGCGACGAGGGTCTCCACACTGACTTCGCC 1190
>seq4817
Length=13321
Score = 96.9 bits (106), Expect = 1e-14
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|| || || ||||||||| ||||||||| ||||| ||||| |||| ||| || |
Sbjct 6685 TGAGCAATCGTCATACGAGAGGGAATAGCGTGGGGGTTGATAATGAGGTCAGGCACAATA 6626
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957
|| || |||||| ||||| || | || | ||| || | ||||| |||||||||||
Sbjct 6625 CCCTCGCGAGTGAAAGGCATGTCTTCTTGG-CGGTAAGTGATACCAATGGTTCCCTTTTG 6567
Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987
||||||||||| |||||||||||||||
Sbjct 6566 ACCGTGACGAGAGGCGAACTTATCACCAAT 6537
>seq2066
Length=23807
Score = 86.0 bits (94), Expect = 2e-11
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 354015 GGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAAC 354074
||| ||| |||| || ||||||||||| | ||||||||| || ||||| |||| ||||
Sbjct 22048 GGCAAGACCACCGAGGGAGTCACGGTCCAAGAAATTAGTCGGCTCGTCGAGGACGAGAAG 22107
Query 354075 GTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134
|| || | ||||||| || |||| || || ||||| |||||||| || || || ||
Sbjct 22108 ATGGGGGTTGTTCCACATGGCGCCAGCGAGGACGACCTTGACCTTCTGGCCACCGGAGAG 22167
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471687859278560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |