Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3426 123 7e-23 seq3646 118 3e-21 seq4817 96.9 1e-14 seq2066 86.0 2e-11 >seq3426 Length=8099 Score = 123 bits (136), Expect = 7e-23 Identities = 211/306 (69%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||| || ||||| |||||| | ||| | ||||||| | ||||| | |||||| Sbjct 5570 ATTCCTAACGGTACCATCATACTTGACCATGACATCTTCCAAAGCCTTGACGAGACGACG 5511 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 |||||| ||||||||| | || || ||||| |||||||| ||||| | |||||| | Sbjct 5510 CTGAATGTAACCAGTTTCGGCAGTCTTGACAGCGGTATCAATAAGACCTTCGCGACCAGC 5451 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||| || |||||||| | ||| ||| || || | | | ||| |||| || || Sbjct 5450 CATGGCGTGGAAGAAGAACTCCGATGGTGTAAGTCCTCTCAGGTACGAGTTCTCGACAAA 5391 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATA 302777 ||||| | ||||| || | || ||| || || || |||||||| | || || | Sbjct 5390 TCCACGAGATTCGGGGGAGTAATCATCCTTTGTGAAATGCGGCAGGGTGCGGTACTTGAA 5331 Query 302778 GCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGA 302837 ||| | || |||||||| || || || |||||||||| | | ||||||| || Sbjct 5330 CCCGAAAGGAATACGCTTGCCCTCCACAGATTGCTGTCCCACAAGGGCAGTCATCTGGGA 5271 Query 302838 AATATT 302843 |||||| Sbjct 5270 AATATT 5265 >seq3646 Length=8928 Score = 118 bits (130), Expect = 3e-21 Identities = 241/353 (68%), Gaps = 4/353 (1%) Strand=Plus/Minus Query 133307 gAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATAT 133366 |||||||| ||| || || | || ||| ||| || || || || | ||||| Sbjct 1540 GAAGCCCGCTGCTTCTACGGTTTCCAAATTATGATCGAGAACATTCACGCCGAGACATAC 1481 Query 133367 TCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAACGC 133425 || || ||||| || |||||||| || | || | ||||| || | ||||| || Sbjct 1480 TCCCTCCTCATTGACACATACATCAAGGAGCAAGCTCA-ACGCACATACCTCTTCAATGC 1422 Query 133426 CATTAGCGAAT-TTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGG 133484 ||| | || ||||||| || || ||||| | || |||||| | | |||||||| | Sbjct 1421 CATC-GAGACCATTCCTTGCATCAAGAAGAAGGCCGATTGGGCTGTCAGGTGGATCCAAG 1363 Query 133485 ACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttt 133544 ||||| | | | || || ||||||||||| || |||| || ||||| ||||| | Sbjct 1362 ACAAGGATTCTACCTTCGCCCAGCGTCTCGTTGCCTTCGCTGCCGTTGAGGGTATTTTCT 1303 Query 133545 tCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGT 133604 || ||| | ||| || ||||| |||||||| |||||||| | | |||| || Sbjct 1302 TCTCTGGCTCCTTCGCATCCATTTTCTGGCTTAAGAAGCGTGGCCTCATGGCTGGCCTTA 1243 Query 133605 GTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 || |||||||| || ||||| | ||||||| || ||||| || || ||| Sbjct 1242 CCTTCTCTAACGAGCTCATTTCCCGCGACGAGGGTCTCCACACTGACTTCGCC 1190 >seq4817 Length=13321 Score = 96.9 bits (106), Expect = 1e-14 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 || || || ||||||||| ||||||||| ||||| ||||| |||| ||| || | Sbjct 6685 TGAGCAATCGTCATACGAGAGGGAATAGCGTGGGGGTTGATAATGAGGTCAGGCACAATA 6626 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || || |||||| ||||| || | || | ||| || | ||||| ||||||||||| Sbjct 6625 CCCTCGCGAGTGAAAGGCATGTCTTCTTGG-CGGTAAGTGATACCAATGGTTCCCTTTTG 6567 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||||||||||| ||||||||||||||| Sbjct 6566 ACCGTGACGAGAGGCGAACTTATCACCAAT 6537 >seq2066 Length=23807 Score = 86.0 bits (94), Expect = 2e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 354015 GGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAAC 354074 ||| ||| |||| || ||||||||||| | ||||||||| || ||||| |||| |||| Sbjct 22048 GGCAAGACCACCGAGGGAGTCACGGTCCAAGAAATTAGTCGGCTCGTCGAGGACGAGAAG 22107 Query 354075 GTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 || || | ||||||| || |||| || || ||||| |||||||| || || || || Sbjct 22108 ATGGGGGTTGTTCCACATGGCGCCAGCGAGGACGACCTTGACCTTCTGGCCACCGGAGAG 22167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471687859278560