Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6168 122 1e-21 seq3646 114 2e-19 seq499 113 6e-19 >seq6168 Length=1385 Score = 122 bits (134), Expect = 1e-21 Identities = 102/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 ||||||||| | ||||| ||| |||||||||||||||||||||| |||||||| | || Sbjct 258 CTCTTTGAGATCATCCTGGCCTCCAACTACCTCGACATCAAGCCCCTGCTCGACGTCGGC 317 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | ||||| || ||||||||||| ||| || |||||||| | ||||| ||| Sbjct 318 TGCAAGACGGTGGCGAATATGATCAAGGGGAAGAGCCCGGAGGAGATTAGGAAGACGTTT 377 Query 1592288 AACAT 1592292 || || Sbjct 378 AATAT 382 >seq3646 Length=8928 Score = 114 bits (126), Expect = 2e-19 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 ||| ||||| |||||| |||||| ||||| ||||| || | || ||||| |||||| Sbjct 902 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTAGTCTTACCGGCCAGGGAGATGTTCTCCAT 961 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||| ||||||| || |||||| ||| ||| ||||| || ||||| | Sbjct 962 GAAGTCGAATGGGTTGGCCGATTTGTAGAACTTCTCGTTGCCGAGAGAAAGAAGCAGCCT 1021 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 ||||||||| ||||| ||||| || ||| | | |||||||||||||| ||||| Sbjct 1022 GTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGCAGCGCACA 1081 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG 868924 || || | |||| ||| ||||||| ||| || || |||||| Sbjct 1082 GGGAAGTGCCTCGGTCAGGAACTCTTGCTCAATGCTAACAGCCTCG 1127 Score = 109 bits (120), Expect = 7e-18 Identities = 175/249 (70%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||| ||||||||||| || ||||| ||||| ||| | | |||| | |||||| Sbjct 1493 GTGAATGTTCTCGATCATAATTTGGAAACCGTAGAAGCAGCGGGCTTCTGGGATTTGGAC 1552 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 ||| | |||| || || ||||||||| || || ||||| |||||||| || Sbjct 1553 CTCGCTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTCCGACGCGGCGAAGAA 1612 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGA-GCG--ACACCCAGTGGAC 869811 ||| || ||||| ||| |||| |||||| |||||| ||| ||| ||||| | Sbjct 1613 AGCGAGAACGTGGGAGATGAAGTAGCGCTCATCGTCGTTGAGGCGGTTGTTCCAGTCGTG 1672 Query 869812 GGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | ||| | ||| || | |||||| || ||||||| |||||||| ||||| ||||| Sbjct 1673 GAGGTCCTTGGAGAGATCAATCTCCTCTGCTGTCCAGAAAGAGGCCTCCGCCTTCTTGTA 1732 Query 869872 CATCTCCCA 869880 ||||| ||| Sbjct 1733 CATCTGCCA 1741 >seq499 Length=3129 Score = 113 bits (124), Expect = 6e-19 Identities = 179/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| ||||| | || |||| ||| ||||||||||||||||| |||| || || || Sbjct 610 TGGTCAACGTATCTTGCAGTGTTGTTGAAGACGCGGAGCATGGGAACGATACCATTCGAG 669 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||||| || || | ||| || || | ||| || | || | || ||| Sbjct 670 TTTCCGTTGGTACCAGCGATGTATGCACCAGTGGCACGGATACGATGGATGTTCAATCCG 729 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||| ||||| | || || ||||| ||||| ||||| ||||| Sbjct 730 ATACCTCCGGCGGTCTTTGAGATCATGGCACAGGTCTTGAGTGTGTCATAGATACCCTCA 789 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || ||| |||||||||| || | ||||| ||||| || | || | || ||| Sbjct 790 ATACTGTCCTCCTTCATGTCGACCAAGAAGCAGGACGACAGCTGAGCCTGTGGTGTACCG 849 Query 1630306 GCGTTGAAGAGCGTGGG 1630322 || |||||||| || || Sbjct 850 GCATTGAAGAGTGTTGG 866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106574594980960