Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq499 114 1e-20 seq977 107 2e-18 seq498 96.9 3e-15 >seq499 Length=3129 Score = 114 bits (126), Expect = 1e-20 Identities = 460/715 (64%), Gaps = 17/715 (2%) Strand=Plus/Plus Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACA 139361 |||||| | ||||| || | || || || ||||| |||||| | | | || Sbjct 348 CTCGTAGCTCTCGTAAAGCGCCTCAAACTCATCGCCGTAAACGTCAGCCAACCCAGGGCA 407 Query 139362 CTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATC 139421 || || || |||||||| | ||| | |||||| || || ||| ||||||| ||||| Sbjct 408 CTCGTTGGGGCACATGAGGGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGAGATC 467 Query 139422 CGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACG 139481 ||| ||||| | |||| | | ||| || || || || ||| || ||| Sbjct 468 CGGGATCCAGAGAGCGTAGAACAAGTCACGGGCACGGACTTCCTCCTTGCCGTGGTTCTT 527 Query 139482 TTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGC 139541 | ||| || ||||| ||||| || || ||||||||||| || | |||||||| | || Sbjct 528 TCTCAAGTCTAGGAACTCAAAGACATCCGCGTGCCATGGCTCGACGTAGATGGCGAAAGC 587 Query 139542 GCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAA 139598 || || ||| |||||||| || |||| || | ||| || ||||| ||||| | Sbjct 588 ACCAGGGCGCTTGTTGCCACCTTGGTCAACGTATCTTGCAGTGTTGTTGAAGACGCGGAG 647 Query 139599 CATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG---GGACTGTTGCGAGC 139655 ||| || | | ||| ||| |||||||||| | | |||| | || || || Sbjct 648 CATGGGAACGATACCATTCGAGTTTCCGTTGGTACCAGCGATGTATGCACCAGTG---GC 704 Query 139656 TCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA-AT 139714 |||| ||| | || | ||||| || ||| | || || || | | || | Sbjct 705 ACGGATACGATGGATGTTCAATCCGATACCTCCGGCGGTCTTTGAGATCATGGCACAGGT 764 Query 139715 CGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATG 139774 | | | ||| || || ||||| || ||||| |||| ||| ||||| ||||| | Sbjct 765 CTTG-AGTGTGTCATAGATACCCTCAATACTGTCCTCCTTCATGTCGACCAAGAAGCAGG 823 Query 139775 ACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-C 139833 |||| || || | || || ||||| || || || || ||||| ||||| Sbjct 824 ACGACAGCTGAGCCTGTGGTGTACCGGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAAGT 883 Query 139834 ATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATA 139893 ||||| ||||| | | ||| || ||||| | || |||||||| ||||| || Sbjct 884 ATTTG-GAAGACATGAGGTTGTATGTCTCGATTGTCTTCTCAATATCCTCGCCGTGAATG 942 Query 139894 CCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAttttt 139953 || || | || ||||| | ||| || || || || || ||| || || | Sbjct 943 CCCACCGCAACACGCATAATCATGTGCTGCGGCCTCTCAGCAACCTTTCCATCAAGACGG 1002 Query 139954 ttCAGATAACCGTTCTCT--AGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 ||||| || ||||| || |||||| |||||||||| ||||||||||| Sbjct 1003 AGAAGATA--CGATCTCTCCAGTGTCTTGAAGCCAAAGTATTGGTAGTTGAAATC 1055 >seq977 Length=6114 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || || || || ||||||||||| || ||| | || Sbjct 4764 ATGCAGATTTTTGTCAAGACTCTTACGGGCAAGACGATTACGCTCGAGGTGGAATCATCC 4823 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| |||||||| || || || ||||| || || Sbjct 4824 GATACTATCGACAATGTTAAGAGCAAGATTCAAGACAAGGAGGGTATTCCTCCGGACCAG 4883 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| || || || || ||| |||||||| | | | |||| || || ||| Sbjct 4884 CAGCGCCTGATTTTCGCAGGCAAGCAGTTGGAGGATGGCCGCACCTTGTCGGACTACAAC 4943 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| ||||| || || || || ||||| Sbjct 4944 ATTCAGAAGGAGTCCACTCTGCATTTGGT 4972 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| |||| || || || || || || || || | || || || | || Sbjct 4536 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGTCGTCC 4595 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || || || ||||| || || Sbjct 4596 GACACCATCGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAG 4655 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||| || || || || ||||| ||||| | | | || ||||| ||| Sbjct 4656 CAGCGCCTGATTTTCGCTGGTAAGCAGCTTGAGGACGGCCGCACTCTCTCCGATTACAAC 4715 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| ||||| ||||| || |||||||| Sbjct 4716 ATTCAGAAGGAGTCGACTCTTCACTTGGT 4744 >seq498 Length=2934 Score = 96.9 bits (106), Expect = 3e-15 Identities = 239/361 (66%), Gaps = 4/361 (1%) Strand=Plus/Plus Query 138358 ATCTCCCACACGGTCTTGTATAGATCACGAATATGTCGC--GGTATTGTTGCAATATTTT 138415 |||||||| |||||||| ||||| | |||||| || || | | || |||| Sbjct 2335 ATCTCCCAGACGGTCTT--ATAGAGGGCCTTGATGTCGGCAGGGATGTTGGGGATGTTTT 2392 Query 138416 GAATGCTCCCGTTGGCCGCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACT 138475 | ||| || | | || |||||||| || |||||| || ||||| || | Sbjct 2393 GGATGGAGCCTCCGTCGGCGATGATGCGGTTCTTCATGTTGTCAGACCACAGACCCATAT 2452 Query 138476 TGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGAC 138535 || |||||| || | || | ||| | || || || || || |||| || |||| Sbjct 2453 CGACCAAGTCCTTGAGCAACCAGGGGTTAACAACTTGGAACTCGCCAGCCAGGACACGAC 2512 Query 138536 GAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCG 138595 | ||||||||| |||| | ||||| || | |||||| || |||||||| | | Sbjct 2513 GCGAGTAAATGTTCGAGGTGTATGGCTCGAAGCACTCGTTGAAGCCGAGAATCTGGGAGG 2572 Query 138596 TGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTC 138655 ||| || || |||||| || || | ||||| || || | |||||| ||||||| Sbjct 2573 TGGAGGCAGTGGGCATGGGTGCAACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCT 2632 Query 138656 GTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 | ||||||| || ||||||||||| ||| |||| | | |||||| ||||| | Sbjct 2633 GGGCCTTGAGAGAGTCCCAGTCCCACAGGTCGGTAGGGGTAACGCCCCACATGTCGTATT 2692 Query 138716 G 138716 | Sbjct 2693 G 2693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449858908806400