Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq4873 140 2e-28 seq977 114 8e-21 seq4907 104 2e-17 >seq4873 Length=13461 Score = 140 bits (154), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||||||||| ||||| ||| ||||||||| ||||| |||||||| ||| |||| || Sbjct 6171 CTCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCA 6230 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || || || ||||| ||||||||||||| || |||||||| | || | ||||||||| Sbjct 6231 TCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 6290 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGT 34938 || | || || ||||| || | ||||| || | ||| || |||| ||| Sbjct 6291 TCCTGGATCTTGGACTTGAC--AT--TGTCGATAGTGTCGGATGACTCCACCTCAAGGGT 6346 Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGA 34979 || ||||| ||||| |||||||| || ||||| ||||||| Sbjct 6347 GATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATGA 6387 >seq977 Length=6114 Score = 114 bits (126), Expect = 8e-21 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 4519 AGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCC 4460 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| |||||||||||||| ||||||||||| | || | ||||||||||| Sbjct 4459 TCAAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCT 4400 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || || |||||| |||| ||| |||||| Sbjct 4399 TGAATCTTGCTCTTAACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTC 4340 Query 34946 TTTCCCGT 34953 || || || Sbjct 4339 TTGCCAGT 4332 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| || ||||||||||||||| || || || || |||| | || Sbjct 4747 AGGACCAAGTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCC 4688 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||| ||||| || |||||||| | || | ||||||||||| Sbjct 4687 TCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 4628 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || || | || |||||| Sbjct 4627 TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGTC 4568 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||||||||| || ||||||||||| Sbjct 4567 TTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 4536 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||||||||||||||| ||||| ||||| || | | |||| Sbjct 5431 AGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTTCCATCC 5372 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| || || |||||||| || |||||||| | || | |||||||| || Sbjct 5371 TCGAGTTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCC 5312 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || || | || || ||| Sbjct 5311 TGAATCTTGGACTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCGAGAGTAATAGTC 5252 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| |||||||| || || |||||||| Sbjct 5251 TTTCCCGTCAGGGTCTTGACGAAAATCTGCAT 5220 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/197 (71%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| |||||||| | | |||| |||| |||| ||||| || ||||| Sbjct 4955 CTCCTTCTGAATGTTGTAGTCCGACAAGGTGCGGCCATCCTCCAACTGCTTGCCTGCGAA 4896 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGAC--- 34902 ||||| || |||||||| | || | ||||||||||| | || || || || Sbjct 4895 AATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGAATCTTGCTCTTAACATT 4836 Query 34903 --GGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960 ||| ||||| | || || || || | || || ||||| ||||| || ||| Sbjct 4835 GTCGATAGTATCGGATGAT-----TCCACCTCGAGCGTAATCGTCTTGCCCGTAAGAGTC 4781 Query 34961 TTTACAAAGATCTGCAT 34977 || ||||| |||||||| Sbjct 4780 TTGACAAAAATCTGCAT 4764 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| || || || || | || |||| || || ||||| || || || Sbjct 5183 CTCCTTCTGAATGTTGTAATCAGACAGAGTACGGCCATCCTCTAGCTGCTTGCCCGCAAA 5124 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || || || |||||||| | || | |||||||| || | || || ||||| Sbjct 5123 AATTAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGGATCTTAGACTTGAC--- 5067 Query 34906 TGCTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCT 34961 | ||||||| || | |||||| || | || || |||||||| ||||| |||| Sbjct 5066 -GTTATCGATGGTATCCGACGACTCGACCTCCAACGTAATTGTCTTTCCGGTGAGAGTCT 5008 Query 34962 TTACAAAGATCTGCAT 34977 | || ||||| ||||| Sbjct 5007 TGACGAAGATTTGCAT 4992 >seq4907 Length=24529 Score = 104 bits (114), Expect = 2e-17 Identities = 136/186 (73%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || ||| |||| |||| || || ||||| || || |||| Sbjct 4491 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGA 4432 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| | || | ||||||||||| | || || ||||| || Sbjct 4431 TCAGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCTTGGATCTTCGACTTGAC--AT- 4375 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || |||||| |||| ||| |||||||| ||||| | |||||| Sbjct 4374 -TGTCGATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTG 4316 Query 34964 ACAAAG 34969 || ||| Sbjct 4315 ACGAAG 4310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325665490658720