Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3646 122 8e-23 seq977 116 4e-21 seq4873 114 1e-20 seq4907 96.9 3e-15 seq498 87.8 2e-12 >seq3646 Length=8928 Score = 122 bits (134), Expect = 8e-23 Identities = 332/503 (66%), Gaps = 13/503 (3%) Strand=Plus/Plus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||| ||||||||||| ||||| || ||||| || || || ||| || ||||| | ||| Sbjct 902 GTAGTCGCCGACGCGCTTCTCGAAGAAGTTAGTCTTACCGGCCAGGGAGATGTTCTCCAT 961 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCG 120473 || ||||| |||||| || || || | ||| | ||| | | ||||| | Sbjct 962 GAAGTCGAATGGGTTGGCCGATTTGTAGAACTTCTCGTTGCCGAGAGAAAGAAGCAGCCT 1021 Query 120474 GTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCAC 120533 ||| || || ||||||||||| | ||| | | ||||||||||| |||| ||| || Sbjct 1022 GTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGCAGCGC-AC 1080 Query 120534 CGGCAAC-GCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGA 120592 || || ||| || | ||||| | ||||||| || ||||| | | | | | Sbjct 1081 AGGGAAGTGCCTCGGTCAGGAACTCTTGCTCAATGCTAACAGCCTCGGTAATGACGTCTT 1140 Query 120593 GCATAGTGTG---GCC-GGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCA 120648 | | | || || |||| ||||| | | | | | || ||||| || Sbjct 1141 GGACGGCCTGCTTGCTTGGGCG----GTGTTTAAGGTGAGA---GAAGAGGAGGCAGGCG 1193 Query 120649 AAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGC 120708 ||||| ||||| || ||||||||||| || || |||||||| || || ||||| | | Sbjct 1194 AAGTCAGTGTGGAGACCCTCGTCGCGGGAAATGAGCTCGTTAGAGAAGGTAAGGCCAGCC 1253 Query 120709 ATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCC 120768 |||| ||| | |||| | |||| |||| || ||| ||| || ||||| | ||| Sbjct 1254 ATGAGGCCACGCTTCTTAAGCCAGAAAATGGATGCGAAGGAGCCAGAGAAGAAAATACCC 1313 Query 120769 TCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCAC 120828 || ||| || ||||| || | |||| ||| || || | |||| | ||||||| Sbjct 1314 TCAACGGCAGCGAAGGCAACGAGACGCTGGGCGAAGGTAGAATCCTTGTCTTGGATCCAC 1373 Query 120829 TTCATGGCCCACTCGGCCTTTTT 120851 | | ||||| |||||||| || Sbjct 1374 CTGACAGCCCAATCGGCCTTCTT 1396 >seq977 Length=6114 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||||||| | ||| |||||| |||||||| || Sbjct 4732 GTCGACTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCAAGCTGCTTACCA 4673 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| |||| || ||||||||||| ||||| ||||| |||||||| ||||| |||| Sbjct 4672 GCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTG 4613 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||||| | ||| || || | |||| ||| ||||| || || || Sbjct 4612 ACGTTGTCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGTCTTGCCAGTGAGGGTC 4553 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 4552 TTAACGAAGATCTGCAT 4536 Score = 105 bits (116), Expect = 6e-18 Identities = 149/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||||| ||||| || ||||| || || ||| | | | ||||| | Sbjct 4969 AAATGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGACAAGGTGCGGCCA-TCCTCCAA 4911 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| |||| || ||||||||||| ||||| || || |||||||| || Sbjct 4910 CTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGAAT 4851 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | || | || |||| | ||||| |||| || | || ||||| Sbjct 4850 CTTGCTCTTAACATTGTCGATAGTATCGGATGATTCCACCTCGAGCGTAATCGTCTTGCC 4791 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| || || ||||||||||| Sbjct 4790 CGTAAGAGTCTTGACAAAAATCTGCAT 4764 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||||| |||||||| ||||| || |||||||| || || | | | ||||| |||| Sbjct 5195 ATGTAAAGTGGACTCCTTCTGAATGTTGTAATCAGACAGAGTACGGCCA-TCCTCTAGCT 5137 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||||||||| |||| || ||||||||||| || |||||||| ||||| || ||||| Sbjct 5136 GCTTGCCCGCAAAAATTAGGCGCTGCTGGTCCGGTGGGATGCCCTCCTTATCTTGGATCT 5077 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | || | || || | | ||| || || | || | || || |||| Sbjct 5076 TAGACTTGACGTTATCGATGGTATCCGACGACTCGACCTCCAACGTAATTGTCTTTCCGG 5017 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || ||||| || ||||| Sbjct 5016 TGAGAGTCTTGACGAAGATTTGCAT 4992 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | |||| ||| ||||| || ||||| |||| || ||| |||||||| Sbjct 5425 AAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTTCCATCCTCGAGT 5366 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || || ||||||||||| || ||||| || ||||| || ||| Sbjct 5365 TGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGAATC 5306 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| ||||| | | ||| || |||| || | || || || Sbjct 5305 TTGGACTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCGAGAGTAATAGTCTTTCCC 5246 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| || || |||||||||||||| Sbjct 5245 GTCAGGGTCTTGACGAAAATCTGCAT 5220 >seq4873 Length=13461 Score = 114 bits (126), Expect = 1e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || | ||| | | | ||||||||||||||||| Sbjct 6189 GTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCA-TCCTCGAGCTGCTTGCC 6247 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | ||||||||||| || || || || |||||||| |||||| ||| Sbjct 6248 GGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTT 6307 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||||| | |||||| || | ||||| || ||||| ||||| || Sbjct 6308 GACATTGTCGATAGTGTCGGATGACTCCACCTCAAGGGTGATAGTCTTGCCCGTCAGGGT 6367 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || ||||| || |||||| || Sbjct 6368 CTTCACGAAGATTTGCATGACT 6389 >seq4907 Length=24529 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||||||||||||||| || | || || ||||||||||| ||||| || || |||||| Sbjct 4456 TCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTG 4397 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||||| | || | || |||| || ||| || || | ||||| | Sbjct 4396 TCTTGGATCTTCGACTTGACATTGTCGATAGTATCGGAGGACTCGACCTCAAGGGTGATG 4337 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAA 133651 || ||||| |||| || || ||||| Sbjct 4336 GTCTTGCCCGTCAAGGTCTTGACGAA 4311 >seq498 Length=2934 Score = 87.8 bits (96), Expect = 2e-12 Identities = 278/428 (65%), Gaps = 6/428 (1%) Strand=Plus/Plus Query 148053 GACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGA--GT-CGCTTT 148109 |||||| ||| |||||||| || ||||||||||| ||||| | | || || |||| Sbjct 2272 GACTGGGACTGATCAATGAAGGCTCCACGGTCAGCAGCCATCTGGACGATGGTGCGCTGG 2331 Query 148110 ATCTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATG 148169 ||||||||| | ||||| || || |||||| | | || ||| | |||| Sbjct 2332 GAG---ATCTCCCAGACGGTCTTATAGAGGGCCTTGATGTCGGCAGGGATGTTGGGGATG 2388 Query 148170 CGCTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTG 148229 || | ||||| | || || | || | || ||| | ||| | | || Sbjct 2389 TTTTGGATGGAGCCTCCGTCGGCGATGATGCGGTTCTTCATGTTGTCAGACCACAGACCC 2448 Query 148230 AGCTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACG 148289 | |||| || ||| | || || | | || || || || |||||||| || || || Sbjct 2449 ATATCGACCAAGTCCTTGAGCAACCAGGGGTTAACAACTTGGAACTCGCCAGCCAGGACA 2508 Query 148290 CGCCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGC 148349 || ||| || | ||| || | || || || |||||||| ||| | |||||| Sbjct 2509 CGACGCGAGTAAATGTTCGAGGTGTATGGCTCGAAGCACTCGTTGAAGCCGAGAATCTGG 2568 Query 148350 GCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTT 148409 | ||| | || ||||||||| || || ||||| |||||||| | |||| | | || Sbjct 2569 GAGGTGGAGGCAGTGGGCATGGGTGCAACGAGCAGAGAGTTGCGGACACCGTGCTGCTTG 2628 Query 148410 ATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCG 148469 || | | ||| |||| |||||||||| || | || || ||| |||||||||| Sbjct 2629 ATCTGGGCCTTGAGAGAGTCCCAGTCCCACAGGTCGGTAGGGGTAACGCCCCACATGTCG 2688 Query 148470 TACTGCAG 148477 || || || Sbjct 2689 TATTGGAG 2696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483379225811200