Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq977 96.9 8e-15 seq4873 87.8 4e-12 >seq977 Length=6114 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || || ||||| || | || |||||| || || Sbjct 4767 CAGATTTTTGTCAAGACTCTTACGGGCAAGACGATTACGCTCGAGGTGGAATCATCCGAT 4826 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||||| || || || ||| |||||| || Sbjct 4827 ACTATCGACAATGTTAAGAGCAAGATTCAAGACAAGGAGGGTATTCCTCCGGACCAGCAG 4886 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| || ||||||||||| ||||| | || ||| | || |||||| | Sbjct 4887 CGCCTGATTTTCGCAGGCAAGCAGTTGGAGGATGGCCGCACCTTGTCGGACTACAACATT 4946 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| ||||| || | ||| | | ||||| Sbjct 4947 CAGAAGGAGTCCACTCTGCATTTGGTTCTCCGTCTTCG 4984 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||||||||| || || || ||||| |||| Sbjct 4551 AAGACCCTCACTGGCAAGACCATCACTTTGGAGGTTGAGTCGTCCGACACCATCGACAAC 4610 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||||| || || || || ||| |||||| || | || || ||| Sbjct 4611 GTCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGCCTGATTTTC 4670 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || || || | ||| | ||||||||||| | ||||| ||||| Sbjct 4671 GCTGGTAAGCAGCTTGAGGACGGCCGCACTCTCTCCGATTACAACATTCAGAAGGAGTCG 4730 Query 206365 ACTCTTCAC 206373 ||||||||| Sbjct 4731 ACTCTTCAC 4739 >seq4873 Length=13461 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || ||||| || ||||| |||| Sbjct 6370 AAGACCCTGACGGGCAAGACTATCACCCTTGAGGTGGAGTCATCCGACACTATCGACAAT 6311 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || |||||| |||||| || | | |||||| Sbjct 6310 GTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGCTTGATCTTC 6251 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || ||||| | || | | || |||||| ||||||| ||||| Sbjct 6250 GCCGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCC 6191 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||||| | || ||||||| || Sbjct 6190 ACTCTTCACTTGGTCCTGAGACTCCG 6165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181716622496480