Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq499 109 8e-18 seq3646 89.7 7e-12 >seq499 Length=3129 Score = 109 bits (120), Expect = 8e-18 Identities = 182/261 (70%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 || || ||||| |||||||| || || | | ||| ||||| ||||| || | ||| Sbjct 866 CCAACACTCTTCAATGCCGGTACACCACAGGCTCAGCTGTCGTCCTGCTTCTTGGTCGAC 807 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 ||||||| || || ||||| ||||||||||| |||||| || || | ||||| Sbjct 806 ATGAAGGAGGACAGTATTGAGGGTATCTATGACACACTCAAGACCTGTGCCATGATCTCA 747 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACA--CAAGG--TGCGCGCCGCGGGCGCCTA 260100 ||| | ||||| || ||||| || | ||| || | | || ||| | || || || Sbjct 746 AAGACCGCCGGAGGTATCGGATT----GAACATCCATCGTATCCGTGCCACTGGTGCATA 691 Query 260101 CGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGA 260160 | | || || |||||||| | || || || | || |||||||| ||||| || ||| | Sbjct 690 CATCGCTGGTACCAACGGAAACTCGAATGGTATCGTTCCCATGCTCCGCGTCTTCAACAA 631 Query 260161 CACGGCGCGCTACGTCGACCA 260181 ||| || | ||||| ||||| Sbjct 630 CACTGCAAGATACGTTGACCA 610 >seq3646 Length=8928 Score = 89.7 bits (98), Expect = 7e-12 Identities = 170/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 1456531 CGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGG 1456590 |||||| || || ||| ||||||| | | |||| | || || ||||| |||| Sbjct 1127 CGAGGCTGTTAGCATTGAGCAAGAGTTCCTGACCGAGGCACTTCCCTGTGCGCTGCTCGG 1068 Query 1456591 CATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCG 1456650 ||||||||||| | | ||| || ||||||| | || ||||||||| | ||||| Sbjct 1067 CATGAACGCCAAC-TTGATGAAGCAATACATTG-AGTTCGTCGCCGACAGGCTGCTTCTT 1010 Query 1456651 GCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATGGAGTTGAT 1456710 | |||||| | |||||| |||| |||||||||| ||| | |||||| || Sbjct 1009 TCTCTCGGCAAC-GAGAAGTTCTACAAATCGGCCAACCCATTCGACTTCATGGAGAACAT 951 Query 1456711 CTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGTACGCCAAGGCCGG 1456769 ||| || | || ||||| ||||| |||||| ||||| ||||| ||| ||| | || Sbjct 950 CTCCCTGGCCGGTAAGACTAACTTCTTCGAGAAGCGCGTCGGCGACTACCAAAAGACTGG 891 Query 1456770 CGTCA 1456774 |||| Sbjct 890 TGTCA 886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177147611354560