Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq4873 122 9e-23 seq977 122 9e-23 seq4907 96.9 4e-15 >seq4873 Length=13461 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||||| || || | ||| || ||||| ||||| || ||||||||||| | Sbjct 6159 CCTCCACGGAGTCTCAGGACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGAA 6218 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || |||||||| ||||| || || ||||| |||||||| || || || Sbjct 6219 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGA 6278 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | |||||||| || ||||| Sbjct 6279 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCGGATGACTCCACC 6338 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || || || || || | || || ||||| |||||||| Sbjct 6339 TCAAGGGTGATAGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 6385 >seq977 Length=6114 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || ||||| ||||| ||||||||||||| || ||| |||| | || || | ||| Sbjct 4966 TGCAGAGTGGACTCCTTCTGAATGTTGTAGTCCGACAA-GGTGCGGCCATCCTCCAACTG 4908 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 |||||||| ||||||| |||||||| || || || || || || || |||||||| || Sbjct 4907 CTTGCCTGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCTTGAATCTT 4848 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || ||| | || ||||| |||||||| ||||| ||||| || || || || Sbjct 4847 GCTCTTAACATTGTCGATAGTATCGGATGATTCCACCTCGAGCGTAATCGTCTTGCCCGT 4788 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | ||| || || ||||| ||||| Sbjct 4787 AAGAGTCTTGACAAAAATCTGCAT 4764 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || ||||| ||||||||||| ||| | ||| | ||| || ||||| Sbjct 4739 GTGAAGAGTCGACTCCTTCTGAATGTTGTAATCGGAGAGAGTGCGGCCGTCCTCAAGCTG 4680 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || ||||||| |||||||| || || || ||||| || || || ||||| || Sbjct 4679 CTTACCAGCGAAAATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTT 4620 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | ||||||||||| || || || | ||| ||||| || || || Sbjct 4619 GGACTTGACGTTGTCGATGGTGTCGGACGACTCAACCTCCAAAGTGATGGTCTTGCCAGT 4560 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | || |||||||| || ||||| Sbjct 4559 GAGGGTCTTAACGAAGATCTGCAT 4536 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-CAACGGTGTG 134554 || || | ||| | ||| || ||| ||||| || ||||||||||||| || || | Sbjct 5437 AGACGGAGCACCAAGTGAAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGCGTCCTT 5378 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 | || ||||| || || || ||||| |||| |||||||| || || || || || || Sbjct 5377 CCA-TCCTCGAGTTGCTTACCAGCAAAGATCAGGCGCTGCTGGTCCGGTGGGATACCCTC 5319 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || ||||| || ||||| ||| | ||||| || || || || |||||||| Sbjct 5318 CTTATCCTGAATCTTGGACTTGACGTTGTCAATGGTGTCCGAAGACTCAACCTCGAGAGT 5259 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || || || || | || || |||||||| ||||| Sbjct 5258 AATAGTCTTTCCCGTCAGGGTCTTGACGAAAATCTGCAT 5220 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || || |||| ||||| ||||| ||||||||||| || Sbjct 5218 CCACCGCGGAGACGGAGAACAAGATGTAAAGTGGACTCCTTCTGAATGTTGTAATCAGAC 5159 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || ||||| ||||| |||||||| | |||||||| || || || Sbjct 5158 AGAGTACGGCCATCCTCTAGCTGCTTGCCCGCAAAAATTAGGCGCTGCTGGTCCGGTGGG 5099 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || ||||| || || ||||| || | || || ||||| || || Sbjct 5098 ATGCCCTCCTTATCTTGGATCTTAGACTTGACGTTATCGATGGTATCCGACGACTCGACC 5039 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||||| || || ||||| | ||| || ||||| |||||||| Sbjct 5038 TCCAACGTAATTGTCTTTCCGGTGAGAGTCTTGACGAAGATTTGCAT 4992 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || ||||| ||||| || |||||||||||| | |||| | ||| || || || Sbjct 4511 GTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCAAGTTG 4452 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || |||| ||| ||||| || || || || || || || |||||||| || Sbjct 4451 CTTGCCGGCGAAGATCAGACGTTGCTGGTCCGGGGGAATTCCCTCCTTGTCTTGAATCTT 4392 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || ||| | || ||||| || || || || || || ||||| || || || Sbjct 4391 GCTCTTAACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGT 4332 >seq4907 Length=24529 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || |||||||||||| || |||| | || |||||||| ||||| ||||| | Sbjct 4491 CCTTCTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAGA 4432 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| |||||||| || || || || || || || ||||| || || ||||| || Sbjct 4431 TCAGGCGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCTTGGATCTTCGACTTGACATTGT 4372 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | || ||||| || || || || || || ||||| || || || || || || |||| Sbjct 4371 CGATAGTATCGGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAAGGTCTTGACGA 4312 Query 134704 A 134704 | Sbjct 4311 A 4311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505354935737600