Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3646 127 3e-24 >seq3646 Length=8928 Score = 127 bits (140), Expect = 3e-24 Identities = 367/559 (66%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||||||||||||| || || ||||| || | ||| | |||||||| || || || Sbjct 1187 GCAGGCGAAGTCAGTGTGGAGACCCTCGTCGCGGGAAATGAGCTCGTTAGAGAAGGTAAG 1246 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||| ||| || |||||||| || ||||| || |||| || || || ||||| ||||| Sbjct 1247 GCCAGCCATGAGGCCACGCTTCTTAAGCCAGAAAATGGATGCGAAGGAGCCAGAGAAGAA 1306 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---ATG 39792 || || || || || || || ||||| || | || || | | | ||| || || Sbjct 1307 AATACCCTCAACGGCAGCGAAGGCAACGAGACGCTGGGCGAAGGTAGAATCCTTGTCTTG 1366 Query 39793 TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 39852 |||||| | |||||||| || |||||||| | ||||| || || || || ||||| Sbjct 1367 GATCCACCTGACAGCCCAATCGGCCTTCTTCTTGATGCAAGGAATGGTCTCGATGGCATT 1426 Query 39853 AAAGAGATAATGT-TTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 ||||| | |||| || | | || || | ||||| || || | || || Sbjct 1427 GAAGAGGT-ATGTGCGTTGAGCTTGCTCCTTGATGTATGTGTCAATGAGGAGGGAGTATG 1485 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 | || | || ||||| || ||| || || || ||||| || || | ||||| | | Sbjct 1486 TCTCGGCGTGAATGTTCTCGATCATAATTTGGAAACCGTAGAAGCAGCGGGCTTCTGGGA 1545 Query 39972 TTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGG 40031 |||| ||||| | || | || | || || || || ||||| || |||| Sbjct 1546 TTTGGACCTCGCTGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTCCGACGCGG 1605 Query 40032 CAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTG-TCAATTTATTCC 40088 | || || || | || || || || || |||||| | || || |||| Sbjct 1606 CGAAGAAAGCGAGAACGTGGGAGATGAAGTAGCGCTCATCGTCGTTGAGGCGGTTGTTCC 1665 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 |||| | || || || || | ||| | || || |||||||| || || ||||| |||| Sbjct 1666 AGTCGTGGAGGTCCTTGGAGAGATCAATCTCCTCTGCTGTCCAGAAAGAGGCCTCCGCCT 1725 Query 40149 TTTTGTACATGTTCCATAT 40167 | |||||||| | ||| || Sbjct 1726 TCTTGTACATCTGCCAGAT 1744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686849725843200