Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq499 219 5e-52 seq3646 100 4e-16 >seq499 Length=3129 Score = 219 bits (242), Expect = 5e-52 Identities = 621/941 (66%), Gaps = 21/941 (2%) Strand=Plus/Plus Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 111280 |||||| |||| ||||| | |||||||| || || || || |||||| | | | | Sbjct 109 ACATACGTTGGCAGGGCAAGGGATGCCAAGTTACACACGGCAACCTCATCAGGAGCAGAG 168 Query 111281 TACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 111340 ||||| | ||| ||||| || | |||||| || ||| || || | ||||| ||||| Sbjct 169 TACTCGACAATCTCTGTGCAAAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTG 228 Query 111341 CTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAT 111400 ||||| |||||| ||||||||||| |||||| | || | || ||||| || || | Sbjct 229 CTCTTGCGGTTGCAAGCATCCTTGTACAGCATGAAAGGGTTTCCTGTCTCAGTTTGAGCC 288 Query 111401 TTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTC 111456 | |||||| | | ||||| | || | | || | |||| ||| || ||| || Sbjct 289 TCGAGAATGGAGTACCAAAGCTTCTGGGCCTTG----ATGGTCTTGCGACCCTTTCCATC 344 Query 111457 CGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGG 111516 | |||||| | ||| || || |||||||| || || |||| | | || || Sbjct 345 CCTCTCGTAGCTCTCGTAAAGCGCCTCAAACTCATCGCCGTAAACGTCAGCCAACCCAGG 404 Query 111517 TGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAG 111576 || || || || | || | ||| | ||| | |||||| ||||||||||| || Sbjct 405 GCACTCGTTGGGGCACATGAGGGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGAG 464 Query 111577 GTCTGGAATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGT 111635 || || ||||| || | | || | || | ||| || | || || | || |||| Sbjct 465 ATCCGGGATCCAGAGAGCGTAGAACAAGTCACGGGCACGGA-CTTCCTCCTTGCCGTGGT 523 Query 111636 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695 | || || || |||||||| | || |||||||||||||||||| | |||| |||| Sbjct 524 TCTTTCTCAAGTCTAGGAACTCAAAGACATCCGCGTGCCATGGCTCGACGTAGATGGCGA 583 Query 111696 TAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACG 111751 || || | | | | ||| |||| | || || | || ||| ||| || ||| Sbjct 584 AAGCACCAGGGCGCTTGTTG-CCACCTTGGTCAACGTATCTTGCAGTGTTGTTGAAGACG 642 Query 111752 CGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTG 111811 || ||||| |||| ||||||| || | || || || || || | | || Sbjct 643 CGGAGCATGGGAACGATACCATTCGAGTTTCCGTTGGTACCAGCGATGTATGCACCAGTG 702 Query 111812 GCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 111871 || | | | |||||||| || || ||||| || || ||||||||| ||||| Sbjct 703 GCACGGATACGATGGATGTTCAATCCGATACCTCCGGCGGTCTTTGAGATCATGGCACAG 762 Query 111872 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 111931 | | || || |||||||||| | || ||||||||| || ||| | |||||| Sbjct 763 GTCTTGAGTGTGTCATAGATACCCTCAATACTGTCCTCCTTCATGTCGACCAAGAAGCAG 822 Query 111932 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 111991 |||| ||| | ||||||||| ||||||||||| ||||| | ||||| |||| Sbjct 823 GACGACAGCTGAGCCTGTGGTGTACCGGCATTGAAGAGTGTTGGGGAAGCGTGTGTGAA- 881 Query 111992 ATACCTTGG--GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGA 112049 || |||| ||||| || ||||||||| | ||||| || || ||||| | Sbjct 882 GTA-TTTGGAAGACATGAGGTTGTATGTCTCGATTGTCTTCTCAATATCCTCGCCGTGAA 940 Query 112050 TGCCGATTGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCC 112109 |||| | || || ||||| | ||||| ||| || | || | | ||||| || | Sbjct 941 TGCCCACCGCAACACGCATAATCATGTGCTGCGGCCTCTCAGCAACCTTTCCATCAAGAC 1000 Query 112110 GTTGAAGATA-GCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 | ||||||| | || |||| || || |||| |||||||| Sbjct 1001 GGAGAAGATACGATC-TCTCCAGTGTCTTGAAGCCAAAGTA 1040 >seq3646 Length=8928 Score = 100 bits (110), Expect = 4e-16 Identities = 331/509 (65%), Gaps = 7/509 (1%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||||||||| || |||||||| || || || |||||| || || | |||||| || Sbjct 1202 GTGGAGACCCTCGTCGCGGGAAATGAGCTCGTTAGAGAAGGTAAGGCCAGCCATGAGGCC 1261 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| |||| | ||| || || |||||||| |||||||| || Sbjct 1262 ACGCTTCTTAAGCCAGAAAATGGATGCGAAGGAGCCAGAGAAGAAAATACCCTCAACGGC 1321 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGC 122849 || || |||| || || | |||||||| | ||| | | | ||| | | || Sbjct 1322 AGCGAAGGCAACGAGACGCTGGGCGAAGGTAGAATCCTTGTCTTGGATCCACCTGACAGC 1381 Query 122850 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTT 122909 ||| | |||||||||| || || || | || | |||||| | || | | | Sbjct 1382 CCAATCGGCCTTCTTCTTGATGCAAGGAATGGTCTCGATGGCATTGAAGAGGTATGTGCG 1441 Query 122910 TTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCAT 122969 || || | ||||| |||||| ||||||| | || ||||| ||| | |||| | Sbjct 1442 TTGAGCTTGCTCCTTGATGTATGTGTCAATGAGGAGGGAGTATGTCTCGGCGTGAATGTT 1501 Query 122970 TTC-ATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCG 123028 || || || ||| | ||||||| |||| ||||| || || ||||| | | Sbjct 1502 CTCGATCAT-AATTTGGAAACCGTAGAAGCAGCGGGCTTCTGGGATTTGGACCTC-GCTG 1559 Query 123029 CAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGG 123087 | || | | || ||||| |||||||| || ||| | || ||||| || || Sbjct 1560 CTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTCCGACGCGGCGAAGAAAGCGAGA 1619 Query 123088 ATGTACTTTATGAATTTCTTTTCATTTTCATTCA---GGGTCTTCCAGTCGTCAAGATCT 123144 | || ||||| | |||| || || | || | |||||||||| || || Sbjct 1620 ACGTGGGAGATGAAGTAGCGCTCATCGTCGTTGAGGCGGTTGTTCCAGTCGTGGAGGTCC 1679 Query 123145 TTGGACAAATCAACTTCTTCCGCAGTCCA 123173 ||||| | ||||| || || || ||||| Sbjct 1680 TTGGAGAGATCAATCTCCTCTGCTGTCCA 1708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627977989248000