Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudogymnoascus_20sp._20VKM_20F- 3775_20[genbank_20GCA_5F000750715.1_202014-09-09] 6,880 sequences; 28,506,885 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq499 179 5e-40 seq3646 158 1e-33 seq498 120 4e-22 >seq499 Length=3129 Score = 179 bits (198), Expect = 5e-40 Identities = 609/932 (65%), Gaps = 35/932 (4%) Strand=Plus/Plus Query 118638 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACA 118697 ||||||| ||||| || |||||||| | | | || | ||| | | || ||| Sbjct 52 ACAACCTGTGTGACCTCGTGAAGCTTCTGGAAGTCGTATGTGCCGTTGGCCATATCAACA 111 Query 118698 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTAC 118757 ||| | || ||||| | || |||| |||||||| | |||||| | ||| |||| Sbjct 112 TACGTTGGCAGGGCAAGGGATGCCAAGTTACACACGGCAACCTCATCAGGAGCAGAGTAC 171 Query 118758 TCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGAC 118817 || | ||| || ||||| | ||| || || |||||| || | |||||| || || | Sbjct 172 TCGACAATCTCTGTGCAAAGGTTGGAGCTGCGAATGGTACCGAGGTTCTTCTGGTTGCTC 231 Query 118818 TTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTG 118877 || ||| || ||||||||||| |||||| | || | || ||||| ||||| | || | Sbjct 232 TTGCGGTTGCAAGCATCCTTGTACAGCATGAAAGGGTTTCCTGTCTCAGTTTGAGCCTCG 291 Query 118878 AGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTC--- 118933 ||||| | | ||| | | || | || | ||| ||| || |||| | | Sbjct 292 AGAATGGAGTACCAAAGCTTCTGGGCCTTG----ATGGTCTTG---CGACCCTTTCCATC 344 Query 118934 ---CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGG 118990 |||||| | ||| || || |||||||| || || | || | | ||| || Sbjct 345 CCTCTCGTAGCTCTCGTAAAGCGCCTCAAACTCATCGCCGTAAACGTCAGCCAACCCAGG 404 Query 118991 TGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAG 119050 || | ||||| | ||| | ||| | ||| || |||||| |||||||||||||| Sbjct 405 GCACTCGTTGGGGCACATGAGGGTCCAGTCACCGTTCTTCTCAACACGCTTCATGAAGAG 464 Query 119051 GTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATT 119110 || ||||||||||| || |||| | || || || |||| || | || || || Sbjct 465 ATCCGGGATCCAGAGAGCGTAGAACAAGTCACGGGCACGGACTTCCTCCTTGCCGTGGTT 524 Query 119111 GAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGAT 119170 | ||| || | || || | || |||||||||||| || || | ||| | |||| Sbjct 525 CTTTCTCAAGTCTAGGAACTCAAAGACATCCGCGTGCCATGGCTCGACGTAGATGGCGAA 584 Query 119171 TGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATAC 119224 | || | | || ||| | |||| || || || |||||| ||| || || Sbjct 585 AGCACC---AGGGCGCTTGTTGCCACCTTGGTCAACGTATCTTGCAGTGTTGTTGAAGAC 641 Query 119225 ACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTA 119282 || ||||| |||| |||||||| || | || || || || ||| || | || | Sbjct 642 GCGGAGCATGGGAACGATACCATTCGAGTTTCCGTTGGTACCAGCGATGTATG-CAC-CA 699 Query 119283 TTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCG 119342 |||| | || | ||||||| || || ||||| || || ||||||||| || Sbjct 700 GTGGCACGGATACGATGGATGTTCAATCCGATACCTCCGGCGGTCTTTGAGATCATGGCA 759 Query 119343 CACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAG 119402 || | |||| || | ||||| || || || ||| |||| | ||| | |||| Sbjct 760 CAGGTCTTGAGTGTGTCATAGATACCCTCAATACTGTCCTCCTTCATGTCGACCAAGAAG 819 Query 119403 CAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGAT 119461 ||| ||||| ||| ||||| |||||||| || |||||||| ||||| | ||||| | Sbjct 820 CAGGACGACAGCTGA-GCCTGTGGTGTACCGGCATTGAAGAGTGTTGGGGAAGCGTGTGT 878 Query 119462 GAACATACCTTGG--GACATCTTGTCGTAGGTCTCCA-AGACGGCGGGAATGTCTTCCCC 119518 ||| || |||| ||||| || ||| ||||| | | | | ||| || || || Sbjct 879 GAA-GTA-TTTGGAAGACATGAGGTTGTATGTCTCGATTGTCTTC-TCAATATCCTCGCC 935 Query 119519 GTGAATACCGATCGAGACCCGCATAAACATGT 119550 |||||| || | || || ||||||| ||||| Sbjct 936 GTGAATGCCCACCGCAACACGCATAATCATGT 967 >seq3646 Length=8928 Score = 158 bits (174), Expect = 1e-33 Identities = 530/811 (65%), Gaps = 13/811 (2%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| ||| ||| | ||| |||||||| Sbjct 903 TAGTCGCCGACGCGCTTCTCGAAGAAGTTAGTCTTACCGGCCAGGGAGATGTTCTCCATG 962 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCA-AATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || |||||||| || || | || | || | || | || || | Sbjct 963 AAGTCGAATGGGTTGGCCGATTTGTAGAACTTCTCGTTG-CCGAGAGAAAGAAGCAGCCT 1021 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||||||||| | |||| | || |||||| |||| || ||| Sbjct 1022 GTCGGCGACGAACTCAATGTATTGCTTCATCAAGTTGGCGTTCATGCCGAGCAGCGCACA 1081 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || || || || | |||| | | ||||||| ||||| || | || | | || Sbjct 1082 GGGAAGTGCCTCGGTCAGGAACTCTTGCTCAATGCTAACAGCCTCGGTAATGACGTCTTG 1141 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTT-GAAGAGTTCCACGGCAAACTCCT 130025 | || || | ||| || | | | || || |||||| ||| || || Sbjct 1142 GACGGCCTGCTTGCTTGGGCGGT-GTTTAAGGTGAGAGAAGAGGAGGCAGGCGAAGTCAG 1200 Query 130026 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 130085 ||||||||||||||| ||||| ||||| || || |||||| || || | |||||| | Sbjct 1201 TGTGGAGACCCTCGTCGCGGGAAATGAGCTCGTTAGAGAAGGTAAGGCCAGCCATGAGGC 1260 Query 130086 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 130145 | |||||||| | ||||||||| | || |||||||||||||| || ||||| || Sbjct 1261 CACGCTTCTTAAGCCAGAAAATGGATGCGAAGGAGCCAGAGAAGAAAATACCCTCAACGG 1320 Query 130146 ACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCATC 130204 ||||| |||| |||||||| || |||| | | |||| | | |||| | | Sbjct 1321 CAGCGAAGGCAACGAGACGCTGGGCGAAGG-TAGAATCCTTGTCTTGGATCCACCTGACA 1379 Query 130205 GCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTC 130264 ||||| | ||||| |||| ||| || || | ||||| ||| || | ||||| | | Sbjct 1380 GCCCAATCGGCCTTCTTCTTGATGCAAGGAATGGTCTCGATGGCATTGAAGAGGTATGTG 1439 Query 130265 TTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACC 130324 || | | | || |||||||| | || ||||| || ||||| ||| | || | Sbjct 1440 CGTTGAGCTTGCTCCTTGATGTATGTGTCAATGAGGAGGGAGTATGTCTCGGCGTGAATG 1499 Query 130325 ATTTC-ATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATC 130383 | || || || || || ||||||| |||| ||||| || || ||||| | Sbjct 1500 TTCTCGATCATAATTTGGAAAC-CGTAGAAGCAGCGGGCTTCTGGGATTTGGACCTC-GC 1557 Query 130384 TGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 130442 ||| || | | || ||||| |||||||| || ||| | || || || || | Sbjct 1558 TGCTGAAGCGCTCGAGGAGGTTCTCGTTGACAATTCCGTCCGACGCGGCGAAGAAAGCGA 1617 Query 130443 GGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAGAT 130499 | | | ||||| | | |||| ||||| | || | |||||||||| || | Sbjct 1618 GAACGTGGGAGATGAAGTAGCGCTCATCGTCGTTGAGGCGGTTGTTCCAGTCGTGGAGGT 1677 Query 130500 CCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||| |||||||| | |||||| || ||||| Sbjct 1678 CCTTGGAGAGATCAATCTCCTCTGCTGTCCA 1708 >seq498 Length=2934 Score = 120 bits (132), Expect = 4e-22 Identities = 322/489 (66%), Gaps = 14/489 (3%) Strand=Plus/Plus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 |||||||||||||| || |||||||| || |||||||| || | ||||| || | Sbjct 2173 CGGAGGTAGTACATGCCGGTCTTGAGGCCAAGCTTCCAGCCAGCAAAGTGCATGGATGTG 2232 Query 117897 AACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 117956 | |||| | ||||| | |||| || ||| | | ||||| ||||| |||||| Sbjct 2233 ATCTTGCCCATTGTTGGGTCCTTCATGTGGATGTTGAGAGACTGGGACTGATCAATGAAG 2292 Query 117957 CGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTG---ATTTCCCACACAGTC 118013 ||| || || || ||||| | | | | | | || | || ||||| || ||| Sbjct 2293 GCTCCACGGTCAGCAGCCATCTGGACGA--TGGTGCG-CTGGGAGATCTCCCAGACGGTC 2349 Query 118014 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC 118073 | |||||| ||| || || | ||||| | ||| ||||||||||| || || | Sbjct 2350 TTATAGAGGGCCTTGATGTCGGCAGGGATGTTGGGGATGTTTTGGATGGAGCCTCCGTCG 2409 Query 118074 TTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCT----C 118129 || ||| | | |||||| | | ||||| ||||| || | | |||| | Sbjct 2410 GCGATGATGCGGTTCTTCATGTTGTCAGACCACAGACCCATATCGACCAAGTCCTTGAGC 2469 Query 118130 CACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATT 118189 || || | || ||||| ||||| || || ||| || | | || || || Sbjct 2470 AACCAGGGG----TTAACAACTTGGAACTCGCCAGCCAGGACACGACGCGAGTAAATGTT 2525 Query 118190 GGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGG 118249 | ||||||||||| |||||||| ||| || | || |||| |||||||| ||||| Sbjct 2526 CGAGGTGTATGGCTCGAAGCACTCGTTGAAGCCGAGAATCTGGGAGGTGGAGGCAGTGGG 2585 Query 118250 CATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGC 118309 ||||||||| | ||| || ||| |||| ||| | | | | || | ||||||||| Sbjct 2586 CATGGGTGCAACGAGCAGAGAGTTGCGGACACCGTGCTGCTTGATCTGGGCCTTGAGAGA 2645 Query 118310 GTCCCAGTC 118318 ||||||||| Sbjct 2646 GTCCCAGTC 2654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618382014572800